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SCITAS
Software stack
Cryosparc Docker
Commits
048e80b3
Commit
048e80b3
authored
4 years ago
by
Yee-Ting Li
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update for 3.0.1
parent
a5b45138
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Changes
2
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2 changed files
Dockerfile
+2
-2
2 additions, 2 deletions
Dockerfile
Makefile
+6
-3
6 additions, 3 deletions
Makefile
with
8 additions
and
5 deletions
Dockerfile
+
2
−
2
View file @
048e80b3
...
...
@@ -48,7 +48,7 @@ ARG CRYOSPARC_VERSION
ENV
CRYOSPARC_VERSION=${CRYOSPARC_VERSION}
# install master
ENV
CRYOSPARC_MASTER_DIR ${CRYOSPARC_ROOT_DIR}/cryosparc
2
_master
ENV
CRYOSPARC_MASTER_DIR ${CRYOSPARC_ROOT_DIR}/cryosparc_master
RUN
--mount
=
type
=
secret,id
=
cryosparc_license_id
\
curl
-L
https://get.cryosparc.com/download/master-v
${
CRYOSPARC_VERSION
}
/
$(
cat
/run/secrets/cryosparc_license_id
)
|
tar
-xz
\
&&
cd
${
CRYOSPARC_MASTER_DIR
}
\
...
...
@@ -59,7 +59,7 @@ RUN --mount=type=secret,id=cryosparc_license_id \
RUN
sed
-i
's: disk_has_space=.*: disk_has_space="true":g'
${
CRYOSPARC_MASTER_DIR
}
/bin/cryosparcm
# install worker
ENV
CRYOSPARC_WORKER_DIR ${CRYOSPARC_ROOT_DIR}/cryosparc
2
_worker
ENV
CRYOSPARC_WORKER_DIR ${CRYOSPARC_ROOT_DIR}/cryosparc_worker
RUN
--mount
=
type
=
secret,id
=
cryosparc_license_id
\
curl
-L
https://get.cryosparc.com/download/worker-v
${
CRYOSPARC_VERSION
}
/
$(
cat
/run/secrets/cryosparc_license_id
)
|
tar
-xz
\
&&
cd
${
CRYOSPARC_WORKER_DIR
}
\
...
...
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Makefile
+
6
−
3
View file @
048e80b3
#CRYOSPARC_VERSION=2.12.4
#CRYOSPARC_VERSION=2.14.2
CRYOSPARC_VERSION
=
2.15.0
TAG
=
${
CRYOSPARC_VERSION
}
-8
#CRYOSPARC_VERSION=2.15.0
#TAG=${CRYOSPARC_VERSION}-8
CRYOSPARC_VERSION
=
3.0.1
TAG
=
${
CRYOSPARC_VERSION
}
-0
docker
:
sudo
DOCKER_BUILDKIT
=
1 docker build
\
...
...
@@ -22,4 +24,5 @@ desktop:
sudo
docker push slaclab/cryosparc-desktop:
${
TAG
}
desktop-singularity
:
singularity pull
-F
/sdf/group/cryoem/sw/images/cryosparc/
${
CRYOSPARC_VERSION
}
-desktop
/cryosparc-desktop_
${
CRYOSPARC_VERSION
}
.sif2 docker://slaclab/cryosparc-desktop:
${
TAG
}
mkdir
-p
/sdf/group/cryoem/sw/images/cryosparc/
${
CRYOSPARC_VERSION
}
-desktop
/
singularity pull
-F
/sdf/group/cryoem/sw/images/cryosparc/
${
CRYOSPARC_VERSION
}
-desktop
/cryosparc-desktop_
${
CRYOSPARC_VERSION
}
.sif docker://slaclab/cryosparc-desktop:
${
TAG
}
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