From 79defc3dbd4eff7afe71834d465c56869d08f30f Mon Sep 17 00:00:00 2001
From: Antoine Cyril David Hoffmann <ahoffman@ws0.epfl.ch>
Date: Tue, 23 Feb 2021 09:10:06 +0100
Subject: [PATCH] adapt ppb110 script
---
wk/ppb110_run.m | 17 +++++++++++------
1 file changed, 11 insertions(+), 6 deletions(-)
diff --git a/wk/ppb110_run.m b/wk/ppb110_run.m
index 170e11e8..a241120d 100644
--- a/wk/ppb110_run.m
+++ b/wk/ppb110_run.m
@@ -5,7 +5,9 @@ addpath(genpath('../matlab')) % ... add
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% CLUSTER PARAMETERS
CLUSTER.TIME = '01:00:00'; % allocation time hh:mm:ss
-CLUSTER.NODES = '8'; % MPI process
+CLUSTER.NODES = '1'; % MPI process
+CLUSTER.CPUPT = '1'; % CPU per task
+CLUSTER.NTPN = '4'; % N tasks per node
CLUSTER.MEM = '2000'; % Memory
CLUSTER.JNAME = 'test_HeLaZ'; % Job name
USERNAME = 'ahoffman'; % username at ppb110 for folder naming
@@ -25,13 +27,13 @@ MU_J = 0; % Laguerre hyperdiffusivity -mu_j*(d/dvperp)^4 f
TMAX = 150; % Maximal time unit
DT = 2e-2; % Time step
SPS0D = 1; % Sampling per time unit for profiler
-SPS2D = 1/2; % Sampling per time unit for 2D arrays
+SPS2D = 1/10; % Sampling per time unit for 2D arrays
SPS5D = 1/10; % Sampling per time unit for 5D arrays
-SPSCP = 1/10; % Sampling per time unit for checkpoints
+SPSCP = 0; % Sampling per time unit for checkpoints
RESTART = 0; % To restart from last checkpoint
JOB2LOAD= 0;
%% OPTIONS
-SIMID = 'test'; % Name of the simulation
+SIMID = 'test_low_sampling'; % Name of the simulation
SIMID = sprintf(SIMID,NU);
CO = -3; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
CLOS = 0; % Closure model (0: =0 truncation, 1: semi coll, 2: Copy closure J+1 = J, P+2 = P)
@@ -88,11 +90,14 @@ fprintf(fid,[...
'#!/bin/bash\n',...
'#SBATCH --job-name=',CLUSTER.JNAME,'\n',...
'#SBATCH --time=', CLUSTER.TIME,'\n',...
-'#SBATCH -n ', CLUSTER.NODES,'\n',...
+'#SBATCH --nodes=', CLUSTER.NODES,'\n',...
+'#SBATCH --cpus-per-task=', CLUSTER.CPUPT,'\n',...
+'#SBATCH --ntasks-per-node=', CLUSTER.NTPN,'\n',...
'#SBATCH --mem-per-cpu=', CLUSTER.MEM,'\n',...
'#SBATCH --error=err.txt\n',...
'#SBATCH --output=out.txt\n',...
-'module load intel_comp/17.0 impi/17.0 hdf5/1.8.12_intel13.1\n',...
+'module purge\n',...
+'module load PrgEnv-intel/17.0\n',...
'srun ./../../../bin/helaz']);
fclose(fid);
--
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