From 815be2d82380c23676ae61a1482275a44091ac51 Mon Sep 17 00:00:00 2001
From: Antoine Cyril David Hoffmann <ahoffman@spcpc606.epfl.ch>
Date: Mon, 5 Oct 2020 09:59:39 +0200
Subject: [PATCH] slight changes
---
matlab/create_gif.m | 7 ++-
matlab/load_2D_data.m | 2 +-
matlab/load_5D_data.m | 2 +-
src/diagnose.F90 | 2 +-
src/model_mod.F90 | 3 +-
wk/analysis.m | 141 ++++++++++++++++++++++++++++--------------
wk/fort.90 | 40 ++++++------
wk/setup.m | 38 +++++++-----
8 files changed, 146 insertions(+), 89 deletions(-)
diff --git a/matlab/create_gif.m b/matlab/create_gif.m
index 179a71e5..38bdbfed 100644
--- a/matlab/create_gif.m
+++ b/matlab/create_gif.m
@@ -23,9 +23,9 @@ fig = figure;
shading interp;
hold on
- n = 0;
+ in = 1;
nbytes = fprintf(2,'frame %d/%d',n,numel(FIELD(1,1,:)));
- for n = 1:numel(FIELD(1,1,:)) % time loop
+ for n = FRAMES % loop over selected frames
pclr = pcolor(X,Y,FIELD(:,:,n)); shading interp; % frame plot
set(pclr, 'edgecolor','none');
title([FIELDNAME,', $t \approx$', sprintf('%.3d',ceil(T(n)))]);
@@ -35,7 +35,7 @@ fig = figure;
im = frame2im(frame);
[imind,cm] = rgb2ind(im,64);
% Write to the GIF File
- if n == 1
+ if in == 1
imwrite(imind,cm,GIFNAME,'gif', 'Loopcount',inf);
else
imwrite(imind,cm,GIFNAME,'gif','WriteMode','append', 'DelayTime',DELAY);
@@ -46,6 +46,7 @@ fig = figure;
nbytes = nbytes - 1;
end
nbytes = fprintf(2,'frame %d/%d',n,numel(FIELD(1,1,:)));
+ in = in + 1;
end
disp(' ')
disp(['Gif saved @ : ',GIFNAME])
diff --git a/matlab/load_2D_data.m b/matlab/load_2D_data.m
index ddb42e1c..32c192fe 100644
--- a/matlab/load_2D_data.m
+++ b/matlab/load_2D_data.m
@@ -1,4 +1,4 @@
-function [ data, kr, kz, time ] = load_2D_data( filename, variablename )
+function [ data, kr, kz, time, dt ] = load_2D_data( filename, variablename )
%LOAD_2D_DATA load a 2D variable stored in a hdf5 result file from HeLaZ
time = h5read(filename,'/data/var2d/time');
kr = h5read(filename,['/data/var2d/',variablename,'/coordkr']);
diff --git a/matlab/load_5D_data.m b/matlab/load_5D_data.m
index 34cb449f..767ca2b5 100644
--- a/matlab/load_5D_data.m
+++ b/matlab/load_5D_data.m
@@ -1,4 +1,4 @@
-function [ data, p, j, kr, kz, time ] = load_5D_data( filename, variablename )
+function [ data, p, j, kr, kz, time, dt ] = load_5D_data( filename, variablename )
%LOAD_5D_DATA load a 5D variable stored in a hdf5 result file from HeLaZ
time = h5read(filename,'/data/var5d/time');
p = h5read(filename,['/data/var5d/',variablename,'/coordp']);
diff --git a/src/diagnose.F90 b/src/diagnose.F90
index 0c8a7dcb..7b217c7e 100644
--- a/src/diagnose.F90
+++ b/src/diagnose.F90
@@ -175,7 +175,7 @@ SUBROUTINE diagnose(kstep)
! Terminal info
IF (MOD(cstep, INT(1.0/dt)) == 0) THEN
- WRITE(*,"(F4.0,A,F4.0)") time,"/",tmax
+ WRITE(*,"(F5.0,A,F5.0)") time,"/",tmax
ENDIF
! 2.1 0d history arrays
diff --git a/src/model_mod.F90 b/src/model_mod.F90
index 9d6f3ff9..58604cf5 100644
--- a/src/model_mod.F90
+++ b/src/model_mod.F90
@@ -6,6 +6,7 @@ MODULE model
PRIVATE
INTEGER, PUBLIC, PROTECTED :: CO = 0 ! Collision Operator
+ LOGICAL, PUBLIC, PROTECTED :: DK = 0 ! Drift kinetic model
LOGICAL, PUBLIC, PROTECTED :: NON_LIN = .true. ! To turn on non linear bracket term
REAL(dp), PUBLIC, PROTECTED :: mu = 0._dp ! Hyperdiffusivity coefficient (for num. stability)
REAL(dp), PUBLIC, PROTECTED :: nu = 1._dp ! Collision frequency
@@ -31,7 +32,7 @@ CONTAINS
USE prec_const
IMPLICIT NONE
- NAMELIST /MODEL_PAR/ CO, NON_LIN, mu, nu, tau_e, tau_i, sigma_e, sigma_i, &
+ NAMELIST /MODEL_PAR/ CO, DK, NON_LIN, mu, nu, tau_e, tau_i, sigma_e, sigma_i, &
q_e, q_i, eta_n, eta_T, eta_B, lambdaD
READ(lu_in,model_par)
diff --git a/wk/analysis.m b/wk/analysis.m
index 229dbd19..fbcac91a 100644
--- a/wk/analysis.m
+++ b/wk/analysis.m
@@ -2,14 +2,14 @@
JOBNUM = 00;
filename = [BASIC.SIMID,'_','%.2d.h5'];
filename = sprintf(filename,JOBNUM); disp(['Analysing ',filename])
-[Nipj, p_, j_, kr, kz, Ts] = load_5D_data(filename, 'moments_i');
-Nepj = load_5D_data(filename, 'moments_e');
+[Nipj, p_, j_, kr, kz, Ts, dt] = load_5D_data(filename, 'moments_i');
+Nepj = load_5D_data(filename, 'moments_e');
Ni = squeeze(Nipj(1,1,:,:,:));
Ne = squeeze(Nepj(1,1,:,:,:));
PH = load_2D_data(filename, 'phi');
Ts = Ts';
Ns = numel(Ts);
-dt = mean(diff(Ts));
+dt_samp = mean(diff(Ts));
if strcmp(OUTPUTS.write_non_lin,'.true.')
Sipj = load_5D_data(filename, 'Sipj');
Sepj = load_5D_data(filename, 'Sepj');
@@ -45,36 +45,54 @@ for it = 1:numel(PH(1,1,:))
end
%% Post processing
-phi_ST_r = zeros(Nr,Ns); % Space-Time diagram of ES potential
-ne_ST_r = zeros(Nr,Ns); % Space-Time diagram of density
-ni_ST_r = zeros(Nr,Ns); % Space-Time diagram of density
-phi_ST_z = zeros(Nz,Ns); % Space-Time diagram of ES potential
-ne_ST_z = zeros(Nz,Ns); % Space-Time diagram of density
-ni_ST_z = zeros(Nz,Ns); % Space-Time diagram of density
-phi_00 = zeros(1,Ns); % Time evolution of ES potential at origin
-ne_00 = zeros(1,Ns); % Time evolution of density at origin
-ni_00 = zeros(1,Ns); % Time evolution of density at origin
-[~,ir0] = min(abs(r)); [~,iz0] = min(abs(z));
-Ne_11 = zeros(1,Ns); % Time evolution of F density at 1,1
-Ni_11 = zeros(1,Ns); % Time evolution of F density at 1,1
-[~,ikr1] = min(abs(kr-round(1/dkr)*dkr)); [~,ikz1] = min(abs(kz-round(1/dkz)*dkz));
-Sni_norm= zeros(1,Ns); % Time evolution of the amp of density nonlin term
-Sne_norm= zeros(1,Ns); % Time evolution of the amp of vorti. nonlin term
-E_pot = zeros(1,Ns); % Potential energy n^2
-E_kin = zeros(1,Ns); % Kinetic energy grad(phi)^2
-ExB = zeros(1,Ns); % ExB drift intensity \propto |\grad \phi|
-CFL = zeros(1,Ns); % CFL time step
+Ne_ST_kr = zeros(Nkr,Ns); % Space-Time of max_kz Ne(k)
+Ne_ST_kz = zeros(Nkz,Ns); % '' max_kr Ne(k)
+ne_ST_r = zeros(Nr,Ns); % Space-Time of ne(z==0)
+ne_ST_z = zeros(Nz,Ns); % '' r==0
+ne_00 = zeros(1,Ns); % Time evolution of ne(r,z) at origin
+Ne_gm = zeros(1,Ns); % Time evolution of Ne(k) max gamma (max real)
+Ni_ST_kr = zeros(Nkr,Ns); % same for ions
+Ni_ST_kz = zeros(Nkz,Ns); % .
+ni_ST_r = zeros(Nr,Ns); % .
+ni_ST_z = zeros(Nz,Ns); % .
+ni_00 = zeros(1,Ns); % .
+Ni_gm = zeros(1,Ns); % .
+PH_ST_kr = zeros(Nkr,Ns); % same for ES-potential
+PH_ST_kz = zeros(Nkz,Ns); % .
+phi_ST_r = zeros(Nr,Ns); % .
+phi_ST_z = zeros(Nz,Ns); % .
+phi_00 = zeros(1,Ns); % .
+Sne_norm = zeros(1,Ns); % Time evolution of the amp of e nonlin term
+Sni_norm = zeros(1,Ns); % Time evolution of the amp of i nonlin term
+E_pot = zeros(1,Ns); % Potential energy n^2
+E_kin = zeros(1,Ns); % Kinetic energy grad(phi)^2
+ExB = zeros(1,Ns); % ExB drift intensity \propto |\grad \phi|
+CFL = zeros(1,Ns); % CFL time step
Ddr = 1i*KR; Ddz = 1i*KZ; lapl = Ddr.^2 + Ddz.^2;
+[~,ir0] = min(abs(r)); % index of r==0
+[~,iz0] = min(abs(z)); % index of z==0
+[~,ikr1] = min(abs(kr-round(1/dkr)*dkr)); % index of kr==1
+[~,ikz1] = min(abs(kz-round(1/dkz)*dkz)); % index of kz==1
for it = 1:numel(PH(1,1,:))
NE_ = Ne(:,:,it); NN_ = Ni(:,:,it); PH_ = PH(:,:,it);
- phi_ST_r(:,it) = phi(:,iz0,it); phi_ST_z(:,it) = phi(ir0,:,it);
+
ne_ST_r (:,it)= ne(:,iz0,it); ne_ST_z (:,it)= ne(ir0,:,it);
+ Ne_ST_kr (:,it)= max(real(Ne(:,:,it)),[],2);
+ Ne_ST_kz (:,it)= max(real(Ne(:,:,it)),[],1);
+ ne_00(it) = ne(ir0,iz0,it);
+ Ne_gm(it) = max(max(real(Ne(:,:,it))));
+
ni_ST_r (:,it)= ni(:,iz0,it); ni_ST_z (:,it)= ni(ir0,:,it);
- phi_00(it) = phi(ir0,iz0,it);
- ne_00(it) = ne(ir0,iz0,it);
- ni_00(it) = ni(ir0,iz0,it);
- Ne_11(it) = Ne(ikr1,ikz1,it);
- Ni_11(it) = Ni(ikr1,ikz1,it);
+ Ni_ST_kr (:,it)= max(real(Ni(:,:,it)),[],2);
+ Ni_ST_kz (:,it)= max(real(Ni(:,:,it)),[],1);
+ ni_00(it) = ni(ir0,iz0,it);
+ Ni_gm(it) = max(max(real(Ni(:,:,it))));
+
+ phi_ST_r(:,it) = phi(:,iz0,it); phi_ST_z(:,it) = phi(ir0,:,it);
+ PH_ST_kr(:,it) = max(real(PH(:,:,it)),[],2);
+ PH_ST_kz(:,it) = max(real(PH(:,:,it)),[],1);
+ phi_00(it) = phi(ir0,iz0,it);
+
if strcmp(OUTPUTS.write_non_lin,'.true.')
Sni_norm(it) = sum(sum(abs(SNi(:,:,it))));
Sne_norm(it) = sum(sum(abs(SNe(:,:,it))));
@@ -94,7 +112,7 @@ fig = figure; FIGNAME = ['t_evolutions',sprintf('_%.2d',JOBNUM)];
semilogy(Ts,abs(ni_00),'-','DisplayName','$n_i^{00}$');
grid on; xlabel('$t$'); ylabel('$|n_a(x=0,y=0)|$');
subplot(222)
- semilogy(Ts,abs(Ni_11),'-','DisplayName','$\phi$')
+ semilogy(Ts,abs(Ni_gm),'-','DisplayName','$\phi$')
grid on; xlabel('$t$'); ylabel('$|\tilde n(k_r\approx 1,k_z\approx 1)|$');
subplot(223)
semilogy(Ts,E_kin+E_pot,'-','DisplayName','$\sum|ik\tilde\phi_i|^2+\sum|\tilde n_i|^2$')
@@ -110,12 +128,12 @@ end
FMT = '.fig'; save_figure
%% Spectra energy
-fig = figure; FIGNAME = ['Energy_kin_KZ',sprintf('_%.2d',JOBNUM)];
- semilogy(kr(floor(end/2)+1:end),E_kin_KR(floor(end/2)+1:end),'o','DisplayName','$\sum_y\langle|ik\tilde\phi_i|^2\rangle_t$')
- hold on;
- loglog(kz(floor(end/2)+1:end),E_kin_KZ(floor(end/2)+1:end),'o','DisplayName','$\sum_x\langle|ik\tilde\phi_i|^2\rangle_t$')
- grid on; xlabel('$k$'); legend('show');
-FMT = '.fig'; save_figure
+% fig = figure; FIGNAME = ['Energy_kin_KZ',sprintf('_%.2d',JOBNUM)];
+% semilogy(kr(floor(end/2)+1:end),E_kin_KR(floor(end/2)+1:end),'o','DisplayName','$\sum_y\langle|ik\tilde\phi_i|^2\rangle_t$')
+% hold on;
+% loglog(kz(floor(end/2)+1:end),E_kin_KZ(floor(end/2)+1:end),'o','DisplayName','$\sum_x\langle|ik\tilde\phi_i|^2\rangle_t$')
+% grid on; xlabel('$k$'); legend('show');
+% FMT = '.fig'; save_figure
%% CFL condition
fig = figure; FIGNAME = ['CFL',sprintf('_%.2d',JOBNUM)];
@@ -155,17 +173,41 @@ subplot(223)% density
xlabel('$z\,(r=0)$'); ylabel('$t$'); title('$\phi$');
FMT = '.fig'; save_figure
-%% phi
-fig = figure; FIGNAME = ['phi_ST',sprintf('_%.2d',JOBNUM)];
- [TY,TX] = meshgrid(Ts,z);
- pclr = pcolor(TX,TY,(plt(phi_ST_r))); set(pclr, 'edgecolor','none'); colorbar;
- xlabel('$x\,(y=0)$'); ylabel('$t$'); title('$\phi$');
+%% Space-Time diagrams for max_kz(Real)
+plt = @(x) (x);
+fig = figure; FIGNAME = ['kr_space_time_diag',sprintf('_%.2d',JOBNUM)];
+ [TY,TX] = meshgrid(Ts,kr);
+subplot(221)% density
+ pclr = pcolor(TX,TY,(plt(Ne_ST_kr))); set(pclr, 'edgecolor','none'); colorbar;
+ xlabel('$kr$'); ylabel('$t$'); title('$\max_{k_z}(\textrm{Re}(N_e^{00}))$');
+subplot(222)% density
+ pclr = pcolor(TX,TY,(plt(Ni_ST_kr))); set(pclr, 'edgecolor','none'); colorbar;
+ xlabel('$kr$'); ylabel('$t$'); title('$\max_{k_z}(\textrm{Re}(N_i^{00}))$');
+subplot(223)% density
+ pclr = pcolor(TX,TY,(plt(PH_ST_kr))); set(pclr, 'edgecolor','none'); colorbar;
+ xlabel('$kr$'); ylabel('$t$'); title('$\max_{k_z}(\textrm{Re}(\tilde\phi$))');
FMT = '.fig'; save_figure
+%% Space-Time diagrams at max_kr(Real)
+plt = @(x) (x);
+fig = figure; FIGNAME = ['kz_space_time_diag',sprintf('_%.2d',JOBNUM)];
+ [TY,TX] = meshgrid(Ts,kz);
+subplot(221)% density
+ pclr = pcolor(TX,TY,(plt(Ne_ST_kz))); set(pclr, 'edgecolor','none'); colorbar;
+ xlabel('$kz$'); ylabel('$t$'); title('$\max_{k_r}(\textrm{Re}(N_e^{00}))$');
+subplot(222)% density
+ pclr = pcolor(TX,TY,(plt(Ni_ST_kz))); set(pclr, 'edgecolor','none'); colorbar;
+ xlabel('$kz$'); ylabel('$t$'); title('$\max_{k_r}(\textrm{Re}(N_i^{00}))$');
+subplot(223)% density
+ pclr = pcolor(TX,TY,(plt(PH_ST_kz))); set(pclr, 'edgecolor','none'); colorbar;
+ xlabel('$kz$'); ylabel('$t$'); title('$\max_{k_r}(\textrm{Re}(\tilde\phi))$');
+FMT = '.fig'; save_figure
+
+
if 0
%% Show frame
-it = min(1,numel(Ts));
-fig = figure; FIGNAME = ['frame',sprintf('_%.2d',SID)];
+it = min(50,numel(Ts));
+fig = figure; FIGNAME = ['frame',sprintf('_%.2d',JOBNUM)];
subplot(221); plt = @(x) fftshift((real(x)));
pclr = pcolor(fftshift(KR),fftshift(KZ),plt(PH(:,:,it))); set(pclr, 'edgecolor','none'); colorbar;
xlabel('$k_r$'); ylabel('$k_z$'); title(sprintf('t=%.3d',Ts(it))); legend('$\hat\phi$');
@@ -183,19 +225,24 @@ end
FMT = '.fig'; save_figure
end
%%
-DELAY = 0.1; skip_ = 2;
-if 0
+DELAY = 0.07; skip_ = 1;
+FRAMES = 200:skip_:numel(Ts);
+if 1
%% GIFS %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Density electron
GIFNAME = ['ne',sprintf('_%.2d',JOBNUM)]; FIELDNAME = '$n_e^{00}$';
-FIELD = real(ne(:,:,1:skip_:end)); X = XX; Y = YY; T = Ts(1:skip_:end);
+FIELD = real(ne); X = XX; Y = YY; T = Ts;
create_gif
%% Density ion
GIFNAME = ['ni',sprintf('_%.2d',JOBNUM)]; FIELDNAME = '$n_i^{00}$';
-FIELD = real(ni(:,:,1:skip_:end)); X = XX; Y = YY; T = Ts(1:skip_:end);
+FIELD = real(ni); X = XX; Y = YY; T = Ts;
create_gif
%% Phi
GIFNAME = ['phi',sprintf('_%.2d',JOBNUM)]; FIELDNAME = '$\phi$';
-FIELD = real(phi(:,:,1:skip_:end)); X = XX; Y = YY; T = Ts(1:skip_:end);
+FIELD = real(phi); X = XX; Y = YY; T = Ts;
+create_gif
+%% Density electron frequency
+GIFNAME = ['Ni',sprintf('_%.2d',JOBNUM)]; FIELDNAME = '$N_i^{00}$';
+FIELD = real(Ni); X = KR; Y = KZ; T = Ts;
create_gif
end
\ No newline at end of file
diff --git a/wk/fort.90 b/wk/fort.90
index c11d2956..7001202e 100644
--- a/wk/fort.90
+++ b/wk/fort.90
@@ -1,18 +1,19 @@
&BASIC
nrun = 100000000
- dt = 0.001
- tmax = 200
+ dt = 0.0001
+ tmax = 100
RESTART = .true.
/
&GRID
- pmaxe =1
- jmaxe = 0
- pmaxi = 1
- jmaxi = 0
+ pmaxe =5
+ jmaxe = 2
+ pmaxi = 5
+ jmaxi = 2
Nr = 64
- Lr = 20
+ Lr = 10
Nz = 64
- Lz = 20
+ Lz = 10
+ kpar = 0
/
&OUTPUT_PAR
nsave_0d = 0
@@ -22,18 +23,19 @@
write_Ni00 = .true.
write_moments = .true.
write_phi = .true.
- write_non_lin = .true.
+ write_non_lin = .false.
write_doubleprecision = .true.
- resfile0 = 'SwoK_32x64_L_20_P_1_J_0_nB_0.5_nN_1_mu_1e-04_'
- rstfile0 = '../checkpoint/cp_SwoK_32x64_L_20_P_1_J_0_nB_0.5_nN_1_mu_1e-04_'
+ resfile0 = 'gvskr_32x64_L_10_lin_P_5_J_2_nB_0.1_nN_1_mu_1e-02_'
+ rstfile0 = '../checkpoint/cp_gvskr_32x64_L_10_lin_P_5_J_2_nB_0.1_nN_1_mu_1e-02_'
job2load = 0
/
&MODEL_PAR
! Collisionality
- CO = 0
- NON_LIN = .true.
- mu = 0.0001
- nu = 0
+ CO = -2
+ DK = .false.
+ NON_LIN = .false.
+ mu = 0.01
+ nu = 0.01
tau_e = 1
tau_i = 1
sigma_e = 0.023338
@@ -42,7 +44,7 @@
q_i = 1
eta_n = 1
eta_T = 0
- eta_B = 0.5
+ eta_B = 0.1
lambdaD = 0
/
&INITIAL_CON
@@ -50,9 +52,9 @@
initback_moments =0.0001
initnoise_moments =5e-05
iseed =42
- selfmat_file ='../iCa/self_Coll_GKE_0_GKI_0_ESELF_1_ISELF_1_Pmaxe_1_Jmaxe_0_Pmaxi_1_Jmaxi_0_pamaxx_10.h5'
- eimat_file ='../iCa/ei_Coll_GKE_0_GKI_0_ETEST_1_EBACK_1_Pmaxe_1_Jmaxe_0_Pmaxi_1_Jmaxi_0_pamaxx_10_tau_1.0000_mu_0.0233.h5'
- iemat_file ='../iCa/ie_Coll_GKE_0_GKI_0_ITEST_1_IBACK_1_Pmaxe_1_Jmaxe_0_Pmaxi_1_Jmaxi_0_pamaxx_10_tau_1.0000_mu_0.0233.h5'
+ selfmat_file ='../iCa/self_Coll_GKE_0_GKI_0_ESELF_1_ISELF_1_Pmaxe_5_Jmaxe_2_Pmaxi_5_Jmaxi_2_pamaxx_10.h5'
+ eimat_file ='../iCa/ei_Coll_GKE_0_GKI_0_ETEST_1_EBACK_1_Pmaxe_5_Jmaxe_2_Pmaxi_5_Jmaxi_2_pamaxx_10_tau_1.0000_mu_0.0233.h5'
+ iemat_file ='../iCa/ie_Coll_GKE_0_GKI_0_ITEST_1_IBACK_1_Pmaxe_5_Jmaxe_2_Pmaxi_5_Jmaxi_2_pamaxx_10_tau_1.0000_mu_0.0233.h5'
/
&TIME_INTEGRATION_PAR
numerical_scheme='RK4'
diff --git a/wk/setup.m b/wk/setup.m
index c1c45262..022ec000 100644
--- a/wk/setup.m
+++ b/wk/setup.m
@@ -5,29 +5,32 @@ default_plots_options
%% Set Up parameters
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS
-NU = 0.0; % Collision frequency
+NU = 1e-2; % Collision frequency
TAU = 1.0; % e/i temperature ratio
-ETAB = 0.5; % Magnetic gradient
+ETAB = 0.1; % Magnetic gradient
ETAN = 1.0; % Density gradient
ETAT = 0.0; % Temperature gradient
-MU = 1e-4; % Hyper diffusivity coefficient
+MU = 1e-2; % Hyper diffusivity coefficient
+LAMBDAD = 0.0;
%% GRID PARAMETERS
-N = 64; % Frequency gridpoints
-L = 20; % Size of the squared frequency domain
-PMAXE = 01; % Highest electron Hermite polynomial degree
-JMAXE = 00; % Highest '' Laguerre ''
-PMAXI = 01; % Highest ion Hermite polynomial degree
-JMAXI = 00; % Highest '' Laguerre ''
+N = 64; % Frequency gridpoints (Nr = N/2)
+L = 10; % Size of the squared frequency domain
+PMAXE = 05; % Highest electron Hermite polynomial degree
+JMAXE = 02; % Highest '' Laguerre ''
+PMAXI = 05; % Highest ion Hermite polynomial degree
+JMAXI = 02; % Highest '' Laguerre ''
+KPAR = 0.0; % Parellel wave vector component
%% TIME PARAMETERS
-TMAX = 200.0; % Maximal time unit
-DT = 1e-3; % Time step
-SPS = 1; % Sampling per time unit
+TMAX = 100.0; % Maximal time unit
+DT = 1e-4; % Time step
+SPS = 10; % Sampling per time unit
RESTART = 1; % To restart from last checkpoint
JOB2LOAD= 0;
%% OPTIONS
-SIMID = 'SwoK'; % Name of the simulation
-NON_LIN = 1; % activate non-linearity
-CO = 0;
+SIMID = 'gvskr'; % Name of the simulation
+NON_LIN = 0; % activate non-linearity (is cancelled if KREQ0 = 1)
+CO = -2; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty)
+DK = 0; % Drift kinetic model (put every kernel to 1)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
@@ -37,6 +40,7 @@ params = ['P_',num2str(PMAXE),'_J_',num2str(JMAXE),...
'_nB_',num2str(ETAB),'_nN_',num2str(ETAN),'_mu_%0.0e_'];
params = sprintf(params,MU);
if ~NON_LIN; params = ['lin_',params]; end;
+if DK; params = ['DK_',params]; end;
resolution = ['_',num2str(N/2),'x',num2str(N),'_'];
gridname = ['L_',num2str(L),'_'];
BASIC.SIMID = [SIMID,resolution,gridname,params];
@@ -66,8 +70,10 @@ GRID.Nr = N; % r grid resolution
GRID.Lr = L; % r length
GRID.Nz = N; % z ''
GRID.Lz = L; % z ''
+GRID.kpar = KPAR;
% Model parameters
MODEL.CO = CO; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty)
+if DK; MODEL.DK = '.true.'; else; MODEL.DK = '.false.';end;
if NON_LIN; MODEL.NON_LIN = '.true.'; else; MODEL.NON_LIN = '.false.';end;
MODEL.mu = MU;
MODEL.nu = NU; % hyper diffusive coefficient nu for HW
@@ -84,7 +90,7 @@ MODEL.q_i = 1.0;
MODEL.eta_n = ETAN; % source term kappa for HW
MODEL.eta_T = ETAT; % Temperature
MODEL.eta_B = ETAB; % Magnetic
-MODEL.lambdaD = 0.0;
+MODEL.lambdaD = LAMBDAD;
% Time integration and intialization parameters
TIME_INTEGRATION.numerical_scheme = '''RK4''';
INITIAL.only_Na00 = '.false.';
--
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