From 8b0e1eed463e121200e46b01612a47f946787317 Mon Sep 17 00:00:00 2001
From: Antoine Cyril David Hoffmann <ahoffman@spcpc606.epfl.ch>
Date: Fri, 12 Feb 2021 16:00:40 +0100
Subject: [PATCH] typo
---
matlab/create_gif_5D.m | 66 +++++++++++++++++++++++++++++++++++++++++
matlab/write_sbash.m | 3 +-
src/closure_mod.F90 | 67 +++++++++++++++++++++++++++++-------------
src/grid_mod.F90 | 12 +++++---
src/inital.F90 | 10 +++----
src/memory.F90 | 11 +++----
src/stepon.F90 | 7 +++--
wk/analysis_2D.m | 50 ++++---------------------------
wk/local_run.m | 10 +++----
wk/marconi_run.m | 11 +++----
10 files changed, 153 insertions(+), 94 deletions(-)
create mode 100644 matlab/create_gif_5D.m
diff --git a/matlab/create_gif_5D.m b/matlab/create_gif_5D.m
new file mode 100644
index 00000000..c8646c7a
--- /dev/null
+++ b/matlab/create_gif_5D.m
@@ -0,0 +1,66 @@
+
+GIFNAME = ['Nipj_kr',sprintf('_%.2d',JOBNUM)]; INTERP = 0;
+plt = @(x) squeeze(max((abs(x)),[],4));
+FIELD = plt(Nipj); X = kr'; Y = Pi'; T = Ts5D; FRAMES = FRAMES_5D;
+FIELDNAME = 'N_i'; XNAME = '$k_{max}\rho_s$'; YNAME = '$P$';
+
+title1 = GIFNAME;
+FIGDIR = BASIC.RESDIR;
+GIFNAME = [FIGDIR, GIFNAME,'.gif'];
+
+sz = size(FIELD);
+
+% Setup figure frame
+fig = figure('Color','white','Position', [100, 100, sz(2)*400, 400]);
+ for ij_ = 1:sz(2)
+ subplot(100+sz(2)*10+ij_)
+ pclr = imagesc(X,Y,squeeze(FIELD(:,ij_,:,1)));
+ xlabel('$k_r$');
+ if ij_ == 1
+ ylabel('$P$(max o. $k_z$)');
+ else
+ yticks([])
+ end
+ LEGEND = ['$|',FIELDNAME,'^{p',num2str(ij_-1),'}|$']; title(LEGEND);
+ end
+ colormap gray
+ axis tight manual % this ensures that getframe() returns a consistent size
+ in = 1;
+ nbytes = fprintf(2,'frame %d/%d',in,numel(FIELD(1,1,1,:)));
+ for n = FRAMES % loop over selected frames
+ scale = max(max(max(abs(FIELD(:,:,:,n)))));
+ for ij_ = 1:sz(2)
+ subplot(100+sz(2)*10+ij_)
+ pclr = imagesc(X,Y,squeeze(FIELD(:,ij_,:,n))/scale);
+ xlabel(XNAME);
+ if ij_ == 1
+ ylabel(YNAME);
+ else
+ yticks([])
+ end
+ LEGEND = ['$|',FIELDNAME,'^{p',num2str(ij_-1),'}|$']; title(LEGEND);
+ end
+ suptitle(['$t \approx$', sprintf('%.3d',ceil(T(n)))...
+ ,', scaling = ',sprintf('%.1e',scale)]);
+ drawnow
+ % Capture the plot as an image
+ frame = getframe(fig);
+ im = frame2im(frame);
+ [imind,cm] = rgb2ind(im,32);
+ % Write to the GIF File
+ if in == 1
+ imwrite(imind,cm,GIFNAME,'gif', 'Loopcount',inf);
+ else
+ imwrite(imind,cm,GIFNAME,'gif','WriteMode','append', 'DelayTime',DELAY);
+ end
+ % terminal info
+ while nbytes > 0
+ fprintf('\b')
+ nbytes = nbytes - 1;
+ end
+ nbytes = fprintf(2,'frame %d/%d',n,numel(FIELD(1,1,1,:)));
+ in = in + 1;
+ end
+ disp(' ')
+ disp(['Gif saved @ : ',GIFNAME])
+
diff --git a/matlab/write_sbash.m b/matlab/write_sbash.m
index 69556df6..14505251 100644
--- a/matlab/write_sbash.m
+++ b/matlab/write_sbash.m
@@ -34,7 +34,8 @@ fprintf(fid,[...
'#SBATCH --error=err.txt\n',...
'#SBATCH --output=out.txt\n',...
'#SBATCH --account=FUA34_GBSedge\n',...
-'#SBATCH --partition=skl_fua_',CLUSTER.PART,'\n\n',...
+'#SBATCH --partition=skl_fua_',CLUSTER.PART,'\n',...
+'#SBATCH --qos=skl_qos_fualowprio\n\n',...
...% '#SBATCH --job-name=',PARAMS,'\n\n',...
'module load intel\n',...
'module load intelmpi\n',...
diff --git a/src/closure_mod.F90 b/src/closure_mod.F90
index f5dcc433..9c1ddef5 100644
--- a/src/closure_mod.F90
+++ b/src/closure_mod.F90
@@ -15,31 +15,56 @@ CONTAINS
SUBROUTINE apply_closure_model
IMPLICIT NONE
-
! Negative out of bounds indices are put to zero (analytically correct)
- moments_e(ips_e-1,:,:,:,:) = 0._dp
- moments_e(ips_e-2,:,:,:,:) = 0._dp
- moments_e(:,ijs_e-1,:,:,:) = 0._dp
- kernel_e(ijs_e-1,:,:) = 0._dp
-
- moments_i(ips_i-1,:,:,:,:) = 0._dp
- moments_i(ips_i-2,:,:,:,:) = 0._dp
- moments_i(:,ijs_i-1,:,:,:) = 0._dp
- kernel_i(ijs_i-1,:,:) = 0._dp
-
+ DO ikr = ikrs,ikre
+ DO ikz = ikzs,ikze
+
+ DO ip = ipsg_e,ipeg_e
+ moments_e(ip,ijs_e-1,ikr,ikz,:) = 0._dp
+ ENDDO
+ DO ij = ijsg_e,ijeg_e
+ moments_e(ips_e-1,ij,ikr,ikz,:) = 0._dp
+ moments_e(ips_e-2,ij,ikr,ikz,:) = 0._dp
+ ENDDO
+ kernel_e(ijs_e-1,ikr,ikz) = 0._dp
+
+ DO ip = ipsg_i,ipeg_i
+ moments_i(ip,ijs_i-1,ikr,ikz,:) = 0._dp
+ ENDDO
+ DO ij = ijsg_i,ijeg_i
+ moments_i(ips_i-1,ij,ikr,ikz,:) = 0._dp
+ moments_i(ips_i-2,ij,ikr,ikz,:) = 0._dp
+ ENDDO
+ kernel_i(ijs_i-1,ikr,ikz) = 0._dp
+
+ ENDDO
+ ENDDO
! Positive Oob indices are approximated with a model
IF (CLOS .EQ. 0) THEN
! zero truncation, An+1=0 for n+1>nmax
- moments_e(ipe_e+1,:,:,:,:) = 0._dp
- moments_e(ipe_e+2,:,:,:,:) = 0._dp
- moments_e(:,ije_e+1,:,:,:) = 0._dp
- kernel_e(ije_e+1,:,:) = 0._dp
-
- moments_i(ipe_i+1,:,:,:,:) = 0._dp
- moments_i(ipe_i+2,:,:,:,:) = 0._dp
- moments_i(:,ije_i+1,:,:,:) = 0._dp
- kernel_i(ije_i+1,:,:) = 0._dp
-
+ DO ikr = ikrs,ikre
+ DO ikz = ikzs,ikze
+
+ DO ip = ipsg_e,ipeg_e
+ moments_e(ip,ije_e+1,ikr,ikz,:) = 0._dp
+ ENDDO
+ DO ij = ijsg_e,ijeg_e
+ moments_e(ipe_e+1,ij,ikr,ikz,:) = 0._dp
+ moments_e(ipe_e+2,ij,ikr,ikz,:) = 0._dp
+ ENDDO
+ kernel_e(ije_e+1,ikr,ikz) = 0._dp
+
+ DO ip = ipsg_i,ipeg_i
+ moments_i(ip,ije_i+1,ikr,ikz,:) = 0._dp
+ ENDDO
+ DO ij = ijsg_i,ijeg_i
+ moments_i(ipe_i+1,ij,ikr,ikz,:) = 0._dp
+ moments_i(ipe_i+2,ij,ikr,ikz,:) = 0._dp
+ ENDDO
+ kernel_i(ije_i+1,ikr,ikz) = 0._dp
+
+ ENDDO
+ ENDDO
ELSEIF (CLOS .EQ. 1) THEN
! Copy truncation with n+1 = min(nmax,n+1)
diff --git a/src/grid_mod.F90 b/src/grid_mod.F90
index 1bf34538..78f88e22 100644
--- a/src/grid_mod.F90
+++ b/src/grid_mod.F90
@@ -52,7 +52,7 @@ MODULE grid
INTEGER, DIMENSION(:), ALLOCATABLE, PUBLIC :: jarray_i
INTEGER, PUBLIC, PROTECTED :: ips_e,ipe_e, ijs_e,ije_e ! Start and end indices for pol. deg.
INTEGER, PUBLIC, PROTECTED :: ips_i,ipe_i, ijs_i,ije_i
- INTEGER, PUBLIC, PROTECTED :: ipsg_e,ipeg_e, ijsg_e,ijeg_e ! Ghosts start and end
+ INTEGER, PUBLIC, PROTECTED :: ipsg_e,ipeg_e, ijsg_e,ijeg_e ! Ghosts start and end indices
INTEGER, PUBLIC, PROTECTED :: ipsg_i,ipeg_i, ijsg_i,ijeg_i
! Public Functions
PUBLIC :: init_1Dgrid_distr
@@ -85,11 +85,10 @@ CONTAINS
DO ip = ips_e,ipe_e; parray_e(ip) = (ip-1); END DO
DO ip = ips_i,ipe_i; parray_i(ip) = (ip-1); END DO
- ! Ghosts indices
+ ! Ghosts boundaries
ipsg_e = ips_e - 2; ipeg_e = ipe_e + 2;
- ijsg_e = ijs_e - 1; ijeg_e = ije_e + 1;
ipsg_i = ips_i - 2; ipeg_i = ipe_i + 2;
- ijsg_i = ijs_i - 1; ijeg_i = ije_i + 1;
+
END SUBROUTINE set_pgrid
SUBROUTINE set_jgrid
@@ -103,8 +102,13 @@ CONTAINS
ALLOCATE(jarray_i(ijs_i:ije_i))
DO ij = ijs_e,ije_e; jarray_e(ij) = ij-1; END DO
DO ij = ijs_i,ije_i; jarray_i(ij) = ij-1; END DO
+
maxj = MAX(jmaxi, jmaxe)
+ ! Ghosts boundaries
+ ijsg_e = ijs_e - 1; ijeg_e = ije_e + 1;
+ ijsg_i = ijs_i - 1; ijeg_i = ije_i + 1;
+
END SUBROUTINE set_jgrid
diff --git a/src/inital.F90 b/src/inital.F90
index c1f376af..d3ad1c45 100644
--- a/src/inital.F90
+++ b/src/inital.F90
@@ -46,9 +46,9 @@ SUBROUTINE inital
IF (my_id .EQ. 0) WRITE(*,*) '..done'
ENDIF
- IF (my_id .EQ. 0) WRITE(*,*) 'Set closure model..'
- CALL apply_closure_model
- IF (my_id .EQ. 0) WRITE(*,*) '..done'
+ ! IF (my_id .EQ. 0) WRITE(*,*) 'Set closure model..'
+ ! CALL apply_closure_model
+ ! IF (my_id .EQ. 0) WRITE(*,*) '..done'
END SUBROUTINE inital
!******************************************************************************!
@@ -81,7 +81,7 @@ SUBROUTINE init_moments
DO ikr=ikrs,ikre
DO ikz=ikzs,ikze
CALL RANDOM_NUMBER(noise)
- moments_e( ip,ij, ikr, ikz, :) = (initback_moments + initnoise_moments*(noise-0.5_dp))
+ moments_e( ip,ij, ikr,ikz, :) = (initback_moments + initnoise_moments*(noise-0.5_dp))
END DO
END DO
@@ -100,7 +100,7 @@ SUBROUTINE init_moments
DO ikr=ikrs,ikre
DO ikz=ikzs,ikze
CALL RANDOM_NUMBER(noise)
- moments_i( ip,ij,ikr,ikz, :) = (initback_moments + initnoise_moments*(noise-0.5_dp))
+ moments_i( ip,ij, ikr,ikz, :) = (initback_moments + initnoise_moments*(noise-0.5_dp))
END DO
END DO
diff --git a/src/memory.F90 b/src/memory.F90
index 9b8f8d8c..cf51beaa 100644
--- a/src/memory.F90
+++ b/src/memory.F90
@@ -11,19 +11,20 @@ SUBROUTINE memory
USE prec_const
IMPLICIT NONE
- ! Moments and moments rhs
+ ! Moments with ghost degrees for p+2 p-2, j+1, j-1 truncations
CALL allocate_array( moments_e, ipsg_e,ipeg_e, ijsg_e,ijeg_e, ikrs,ikre, ikzs,ikze, 1,ntimelevel )
CALL allocate_array( moments_i, ipsg_i,ipeg_i, ijsg_i,ijeg_i, ikrs,ikre, ikzs,ikze, 1,ntimelevel )
+
+ ! Moments right-hand-side (contains linear part of hierarchy)
CALL allocate_array( moments_rhs_e, ips_e,ipe_e, ijs_e,ije_e, ikrs,ikre, ikzs,ikze, 1,ntimelevel )
CALL allocate_array( moments_rhs_i, ips_i,ipe_i, ijs_i,ije_i, ikrs,ikre, ikzs,ikze, 1,ntimelevel )
! Electrostatic potential
CALL allocate_array(phi, ikrs,ikre, ikzs,ikze)
- ! Electron kernel evaluation from ij=0 to jmax+1 for truncation
- CALL allocate_array(Kernel_e, ijs_e-1,ije_e+1, ikrs,ikre, ikzs,ikze)
- ! Ion kernel evaluation
- CALL allocate_array(Kernel_i, ijs_i-1,ije_i+1, ikrs,ikre, ikzs,ikze)
+ ! Kernel evaluation from j= -1 to jmax+1 for truncation
+ CALL allocate_array(Kernel_e, ijsg_e,ijeg_e, ikrs,ikre, ikzs,ikze)
+ CALL allocate_array(Kernel_i, ijsg_i,ijeg_i, ikrs,ikre, ikzs,ikze)
! Collision matrix
IF (CO .EQ. -1) THEN
diff --git a/src/stepon.F90 b/src/stepon.F90
index 2cfecf37..ac3110d4 100644
--- a/src/stepon.F90
+++ b/src/stepon.F90
@@ -17,6 +17,10 @@ SUBROUTINE stepon
LOGICAL :: mlend
DO num_step=1,ntimelevel ! eg RK4 compute successively k1, k2, k3, k4
+
+ ! Closure enforcement
+ CALL apply_closure_model
+
! Compute right hand side of moments hierarchy equation
CALL moments_eq_rhs_e
CALL moments_eq_rhs_i
@@ -39,9 +43,6 @@ SUBROUTINE stepon
ENDDO
ENDDO
- ! Closure enforcement
- CALL apply_closure_model
-
! Execution time end
CALL cpu_time(t1_adv_field)
tc_adv_field = tc_adv_field + (t1_adv_field - t0_adv_field)
diff --git a/wk/analysis_2D.m b/wk/analysis_2D.m
index 0997be50..825ade8c 100644
--- a/wk/analysis_2D.m
+++ b/wk/analysis_2D.m
@@ -2,39 +2,7 @@
if 0
%%
outfile ='';
-% nu = 0.5
- % Eta = 0.5
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_5e-01/150x75_L_100_P_2_J_1_eta_0.5_nu_5e-01_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_5e-01/150x75_L_100_P_4_J_2_eta_0.5_nu_5e-01_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_5e-01/150x75_L_100_P_6_J_3_eta_0.5_nu_5e-01_DGGK_CLOS_0_mu_3e-03/out.txt';
- % Eta = 0.6
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_5e-01/150x75_L_100_P_2_J_1_eta_0.6_nu_5e-01_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_5e-01/150x75_L_100_P_4_J_2_eta_0.6_nu_5e-01_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_5e-01/150x75_L_100_P_6_J_3_eta_0.6_nu_5e-01_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_5e-01/150x75_L_100_P_8_J_4_eta_0.6_nu_5e-01_DGGK_CLOS_0_mu_3e-03/out.txt';
-
-% nu = 1.0
- % Eta = 0.5
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.5_nu_1e+00/150x75_L_100_P_2_J_1_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.5_nu_1e+00/150x75_L_100_P_4_J_2_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.5_nu_1e+00/150x75_L_100_P_6_J_3_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_3e-03/out.txt';
-
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/200x100_L_100_P_2_J_1_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_1e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/200x100_L_100_P_4_J_2_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_1e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/200x100_L_100_P_6_J_3_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_1e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/200x100_L_100_P_8_J_4_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_1e-03/out.txt';
-
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.5_nu_1e+00/300x150_L_100_P_2_J_1_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_2e-04/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.5_nu_1e+00/300x150_L_100_P_4_J_2_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_2e-04/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.5_nu_1e+00/300x150_L_100_P_6_J_3_eta_0.5_nu_1e+00_DGGK_CLOS_0_mu_2e-04/out.txt';
-
- % Eta = 0.6
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.6_nu_1e+00/200x100_L_100_P_2_J_1_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_1e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/200x100_L_100_P_4_J_2_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_1e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_eta_0.6_nu_1e+00/200x100_L_100_P_6_J_3_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_1e-03/out.txt'; % outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/150x75_L_100_P_8_J_4_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/150x75_L_100_P_8_J_4_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_3e-03/out.txt';
-% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/150x75_L_100_P_8_J_5_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_3e-03/out.txt';
- outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK_nu_1e+00/150x75_L_100_P_10_J_5_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_3e-03/out.txt';
+ outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_restart/150x75_L_70_P_2_J_1_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_8e-04/out.txt';
BASIC.RESDIR = load_marconi(outfile);
end
@@ -281,7 +249,7 @@ save_figure
end
%%
-if 1
+if 0
%% Show frame in kspace
tf = 0; [~,it2] = min(abs(Ts2D-tf)); [~,it5] = min(abs(Ts5D-tf));
fig = figure; FIGNAME = ['krkz_',sprintf('t=%.0f',Ts2D(it2))];set(gcf, 'Position', [100, 100, 700, 600])
@@ -291,9 +259,9 @@ fig = figure; FIGNAME = ['krkz_',sprintf('t=%.0f',Ts2D(it2))];set(gcf, 'Position
subplot(222); plt = @(x) fftshift(abs(x),2);
pclr = pcolor(fftshift(KR,2),fftshift(KZ,2),plt(Ni00(:,:,it2))); set(pclr, 'edgecolor','none'); colorbar;
xlabel('$k_r$'); ylabel('$k_z$'); legend('$|\hat n_i^{00}|$');
- subplot(223); plt = @(x) fftshift((abs(x)),2); FIELD = squeeze(Nipj(1,1,:,:,:));
+ subplot(223); plt = @(x) fftshift((abs(x)),2); FIELD = squeeze(Nipj(1,2,:,:,:));
pclr = pcolor(fftshift(KR,2),fftshift(KZ,2),plt(FIELD(:,:,it5))); set(pclr, 'edgecolor','none'); colorbar;
- xlabel('$k_r$'); ylabel('$k_z$'); legend('$|\hat n_i^{pj=00}|$');
+ xlabel('$k_r$'); ylabel('$k_z$'); legend('$|\hat n_i^{pj=01}|$');
subplot(224); plt = @(x) fftshift((abs(x)),2);
pclr = pcolor(fftshift(KR,2),fftshift(KZ,2),plt(Si00(:,:,it5))); set(pclr, 'edgecolor','none'); colorbar;
xlabel('$k_r$'); ylabel('$k_z$');legend('$\hat S_i^{00}$');
@@ -304,7 +272,7 @@ end
if 1
%% Ion moments max mode vs pj
% tf = Ts2D(end-3);
-for tf = [0]
+for tf = [0,1]
[~,it2] = min(abs(Ts2D-tf)); [~,it5] = min(abs(Ts5D-tf));
% it2 = it2 + 1;
fig = figure; FIGNAME = ['kmaxp_Nipj_',sprintf('t=%.2f',Ts2D(it2))];set(gcf, 'Position', [100, 100, 700, 600])
@@ -386,14 +354,6 @@ X = (kz); T = Ts2D; YMIN = -.1; YMAX = 1.1; XMIN = min(kz); XMAX = max(kz);
FIELDNAME = '$N_i^{00}(kr=0)$'; XNAME = '$k_r\rho_s$';
create_gif_1D
end
-if 1
-%% kr vs P Ni
-GIFNAME = ['Nip0_kr',sprintf('_%.2d',JOBNUM)]; INTERP = 0;
-plt = @(x) squeeze(max((abs(x)),[],4));
-FIELD =plt(Nipj(:,1,:,:,:)); X = kr'; Y = Pi'; T = Ts5D; FRAMES = FRAMES_5D;
-FIELDNAME = '$N_i^{p0}$'; XNAME = '$k_{max}\rho_s$'; YNAME = '$P$';
-create_gif_imagesc
-end
if 0
%% kr vs P Si
GIFNAME = ['Sip0_kr',sprintf('_%.2d',JOBNUM)]; INTERP = 0;
diff --git a/wk/local_run.m b/wk/local_run.m
index 333f9d01..377fd3ec 100644
--- a/wk/local_run.m
+++ b/wk/local_run.m
@@ -4,7 +4,7 @@ addpath(genpath('../matlab')) % ... add
CLUSTER.TIME = '99:00:00'; % allocation time hh:mm:ss
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS
-NU = 0.0; % Collision frequency
+NU = 1.0; % Collision frequency
TAU = 1.0; % e/i temperature ratio
ETAB = 0.6; % Magnetic gradient
ETAN = 1.0; % Density gradient
@@ -19,14 +19,14 @@ JMAXE = 1; % Highest '' Laguerre ''
PMAXI = 2; % Highest ion Hermite polynomial degree
JMAXI = 1; % Highest '' Laguerre ''
%% TIME PARAMETERS
-TMAX = 60; % Maximal time unit
+TMAX = 50; % Maximal time unit
DT = 1e-2; % Time step
SPS0D = 1; % Sampling per time unit for profiler
SPS2D = 1; % Sampling per time unit for 2D arrays
SPS5D = 1; % Sampling per time unit for 5D arrays
-SPSCP = 1; % Sampling per time unit for checkpoints/10
-RESTART = 1; % To restart from last checkpoint
-JOB2LOAD= 1;
+SPSCP = 1/10; % Sampling per time unit for checkpoints/10
+RESTART = 0; % To restart from last checkpoint
+JOB2LOAD= 0;
%% OPTIONS
% SIMID = 'local_nu_%0.0e'; % Name of the simulation
% SIMID = sprintf(SIMID,NU);
diff --git a/wk/marconi_run.m b/wk/marconi_run.m
index 60c4d176..394387bc 100644
--- a/wk/marconi_run.m
+++ b/wk/marconi_run.m
@@ -8,7 +8,7 @@ CLUSTER.TIME = '01:00:00'; % allocation time hh:mm:ss
CLUSTER.NODES = '1'; % MPI process
CLUSTER.CPUPT = '1'; % CPU per task
CLUSTER.NTPN = '8'; % N tasks per node
-CLUSTER.PART = 'dbg'; % dbg or prod
+CLUSTER.PART = 'prod'; % dbg or prod
CLUSTER.MEM = '16GB'; % Memory
CLUSTER.JNAME = 'gamma_inf';% Job name
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
@@ -19,8 +19,8 @@ NU_HYP = 0.1; % Hyperdiffusivity coefficient
%% GRID PARAMETERS
N = 150; % Frequency gridpoints (Nkr = N/2)
L = 70; % Size of the squared frequency domain
-P = 4; % Electron and Ion highest Hermite polynomial degree
-J = 2; % Electron and Ion highest Laguerre polynomial degree
+P = 2; % Electron and Ion highest Hermite polynomial degree
+J = 1; % Electron and Ion highest Laguerre polynomial degree
%% TIME PARAMETERS
TMAX = 500; % Maximal time unit
DT = 2e-2; % Time step
@@ -29,9 +29,10 @@ SPS2D = 1/2; % Sampling per time unit for 2D arrays
SPS5D = 1/10; % Sampling per time unit for 5D arrays
SPSCP = 1/10; % Sampling per time unit for checkpoints
RESTART = 0; % To restart from last checkpoint
-JOB2LOAD= 1;
+JOB2LOAD= 0;
%% OPTIONS
-SIMID = 'Marconi_DGGK_nu_%0.0e'; % Name of the simulation
+% SIMID = 'Marconi_DGGK_nu_%0.0e'; % Name of the simulation
+SIMID = 'Marconi_restart'; % Name of the simulation
SIMID = sprintf(SIMID,NU);
CO = -3; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
CLOS = 0; % Closure model (0 : =0 truncation, 1 : n+j = min(nmax,n+j), 2: odd/even adapted)
--
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