From 9c460ecf6b6e14f09695c912a492b07ebf6981e6 Mon Sep 17 00:00:00 2001
From: Antoine Cyril David Hoffmann <ahoffman@spcpc606.epfl.ch>
Date: Fri, 15 Jan 2021 14:32:20 +0100
Subject: [PATCH] update scripts
---
Makefile | 6 +++-
matlab/compile_results.m | 25 ++++++++++++++++-
matlab/load_params.m | 11 ++++++++
matlab/setup.m | 19 +++++++++----
matlab/write_fort90.m | 2 +-
wk/analysis_2D.m | 59 ++++++++++++++++++----------------------
wk/linear_study.m | 58 ++++++++++++---------------------------
wk/local_run.m | 22 ++++++++-------
wk/marconi_run.m | 8 +++---
9 files changed, 114 insertions(+), 96 deletions(-)
diff --git a/Makefile b/Makefile
index 456be934..a1e15cad 100644
--- a/Makefile
+++ b/Makefile
@@ -42,7 +42,8 @@ cleanbin:
$(OBJDIR)/diagnose.o : src/srcinfo.h
FOBJ=$(OBJDIR)/advance_field.o $(OBJDIR)/array_mod.o $(OBJDIR)/auxval.o $(OBJDIR)/basic_mod.o \
-$(OBJDIR)/coeff_mod.o $(OBJDIR)/collision_mod.o $(OBJDIR)/compute_Sapj.o $(OBJDIR)/control.o $(OBJDIR)/fourier_mod.o \
+$(OBJDIR)/coeff_mod.o $(OBJDIR)/closure_mod.o $(OBJDIR)/collision_mod.o \
+$(OBJDIR)/compute_Sapj.o $(OBJDIR)/control.o $(OBJDIR)/fourier_mod.o \
$(OBJDIR)/diagnose.o $(OBJDIR)/diagnostics_par_mod.o $(OBJDIR)/endrun.o $(OBJDIR)/fields_mod.o \
$(OBJDIR)/inital.o $(OBJDIR)/initial_par_mod.o $(OBJDIR)/main.o $(OBJDIR)/memory.o \
$(OBJDIR)/model_mod.o $(OBJDIR)/moments_eq_rhs.o $(OBJDIR)/poisson.o \
@@ -68,6 +69,9 @@ $(OBJDIR)/utility_mod.o
$(OBJDIR)/coeff_mod.o : src/coeff_mod.F90 $(OBJDIR)/prec_const_mod.o $(OBJDIR)/basic_mod.o $(OBJDIR)/model_mod.o $(OBJDIR)/basic_mod.o
$(F90) -c $(F90FLAGS) $(FPPFLAGS) $(EXTMOD) $(EXTINC) src/coeff_mod.F90 -o $@
+ $(OBJDIR)/closure_mod.o : src/closure_mod.F90 $(OBJDIR)/model_mod.o $(OBJDIR)/basic_mod.o $(OBJDIR)/grid_mod.o $(OBJDIR)/array_mod.o $(OBJDIR)/fields_mod.o
+ $(F90) -c $(F90FLAGS) $(FPPFLAGS) $(EXTMOD) $(EXTINC) src/closure_mod.F90 -o $@
+
$(OBJDIR)/collision_mod.o : src/collision_mod.F90 $(OBJDIR)/initial_par_mod.o $(OBJDIR)/prec_const_mod.o $(OBJDIR)/model_mod.o $(OBJDIR)/basic_mod.o $(OBJDIR)/grid_mod.o
$(F90) -c $(F90FLAGS) $(FPPFLAGS) $(EXTMOD) $(EXTINC) src/collision_mod.F90 -o $@
diff --git a/matlab/compile_results.m b/matlab/compile_results.m
index ee40fafe..9b1f9d83 100644
--- a/matlab/compile_results.m
+++ b/matlab/compile_results.m
@@ -6,12 +6,33 @@ PHI_ = [];
Ts2D_ = [];
Ts5D_ = [];
Sipj_ = []; Sepj_ = [];
-
+Pe_old = 1e9; Pi_old = Pe_old; Je_old = Pe_old; Ji_old = Pe_old;
while(CONTINUE)
filename = sprintf([BASIC.RESDIR,'outputs_%.2d.h5'],JOBNUM);
if exist(filename, 'file') == 2
+ % Load results of simulation #JOBNUM
load_results
+ % Check polynomials degrees
+ sz = size(Nepj); Pe_new= sz(1); Je_new= sz(2);
+ sz = size(Nipj); Pi_new= sz(1); Ji_new= sz(2);
+ % If a degree is larger than previous job, put them in a larger array
+ if (sum([Pe_new, Je_new, Pi_new, Ji_new]>[Pe_old, Je_old, Pi_old, Ji_old]) >= 1)
+ tmp = Nipj_; sz = size(tmp);
+ Nipj_ = zeros(cat(1,[Pi_new,Ji_new]',sz(3:end)')');
+ Nipj_(1:Pi_old,1:Ji_old,:,:,:) = tmp;
+ tmp = Nepj_; sz = size(tmp);
+ Nepj_ = zeros(cat(1,[Pe_new,Je_new]',sz(3:end)')');
+ Nepj_(1:Pe_old,1:Je_old,:,:,:) = tmp;
+ tmp = Sipj_; sz = size(tmp);
+ Sipj_ = zeros(cat(1,[Pi_new,Ji_new]',sz(3:end)')');
+ Sipj_(1:Pi_old,1:Ji_old,:,:,:) = tmp;
+ tmp = Sepj_; sz = size(tmp);
+ Sepj_ = zeros(cat(1,[Pe_new,Je_new]',sz(3:end)')');
+ Sepj_(1:Pe_old,1:Je_old,:,:,:) = tmp;
+ end
+
+
Nipj_ = cat(5,Nipj_,Nipj);
Nepj_ = cat(5,Nepj_,Nepj);
Ni00_ = cat(3,Ni00_,Ni00);
@@ -28,6 +49,8 @@ while(CONTINUE)
CONTINUE = 0;
disp(['found ',num2str(JOBNUM),' results']);
end
+ Pe_old = Pe_new; Je_old = Je_new;
+ Pi_old = Pi_new; Ji_old = Ji_new;
end
Nipj = Nipj_; Nepj = Nepj_; Ts5D = Ts5D_;
Ni00 = Ni00_; Ne00 = Ne00_; PHI = PHI_; Ts2D = Ts2D_;
diff --git a/matlab/load_params.m b/matlab/load_params.m
index bec47edf..09cee32f 100644
--- a/matlab/load_params.m
+++ b/matlab/load_params.m
@@ -22,3 +22,14 @@ if NON_LIN == 'y'
else
NON_LIN = 0;
end
+
+degngrad = ['Pe_',num2str(PMAXE),'_Je_',num2str(JMAXE),...
+ '_Pi_',num2str(PMAXI),'_Ji_',num2str(JMAXI),...
+ '_nB_',num2str(ETAB),'_nN_',num2str(ETAN),'_nu_%0.0e_',...
+ CONAME,'_mu_%0.0e'];
+degngrad = sprintf(degngrad,[NU,MU]);
+if ~NON_LIN; degngrad = ['lin_',degngrad]; end
+resolution = [num2str(GRID.Nr),'x',num2str(GRID.Nz/2),'_'];
+gridname = ['L_',num2str(L),'_'];
+PARAMS = [resolution,gridname,degngrad];
+BASIC.RESDIR = [SIMDIR,PARAMS,'/'];
diff --git a/matlab/setup.m b/matlab/setup.m
index dd598a39..f85f571d 100644
--- a/matlab/setup.m
+++ b/matlab/setup.m
@@ -13,7 +13,7 @@ GRID.kpar = KPAR;
% Model parameters
MODEL.CO = CO; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty)
-if 0; MODEL.DK = '.true.'; else; MODEL.DK = '.false.';end;
+MODEL.CLOS = CLOS;
if NON_LIN; MODEL.NON_LIN = '.true.'; else; MODEL.NON_LIN = '.false.';end;
MODEL.mu = MU;
MODEL.nu = NU; % hyper diffusive coefficient nu for HW
@@ -61,10 +61,19 @@ elseif(CO == -1); CONAME = 'FC';
elseif(CO == -2); CONAME = 'DG';
elseif(CO == -3); CONAME = 'DGGK';
end
-degngrad = ['Pe_',num2str(PMAXE),'_Je_',num2str(JMAXE),...
- '_Pi_',num2str(PMAXI),'_Ji_',num2str(JMAXI),...
- '_nB_',num2str(ETAB),'_nN_',num2str(ETAN),'_nu_%0.0e_',...
- CONAME,'_mu_%0.0e'];
+if (CLOS == 0); CLOSNAME = 'Trunc.';
+elseif(CLOS == 1); CLOSNAME = 'Clos. 1';
+elseif(CLOS == 2); CLOSNAME = 'Clos. 2';
+end
+if (PMAXE == PMAXI) && (JMAXE == JMAXI)
+ degngrad = ['P_',num2str(PMAXE),'_J_',num2str(JMAXE)];
+else
+ degngrad = ['Pe_',num2str(PMAXE),'_Je_',num2str(JMAXE),...
+ '_Pi_',num2str(PMAXI),'_Ji_',num2str(JMAXI)];
+end
+degngrad = [degngrad,'_eta_',num2str(ETAB/ETAN),'_nu_%0.0e_',...
+ CONAME,'_CLOS_',num2str(CLOS),'_mu_%0.0e'];
+
degngrad = sprintf(degngrad,[NU,MU]);
if ~NON_LIN; degngrad = ['lin_',degngrad]; end
resolution = [num2str(GRID.Nr),'x',num2str(GRID.Nz/2),'_'];
diff --git a/matlab/write_fort90.m b/matlab/write_fort90.m
index 23c331ca..d17d1ec0 100644
--- a/matlab/write_fort90.m
+++ b/matlab/write_fort90.m
@@ -38,7 +38,7 @@ fprintf(fid,'/\n');
fprintf(fid,'&MODEL_PAR\n');
fprintf(fid,' ! Collisionality\n');
fprintf(fid,[' CO = ', num2str(MODEL.CO),'\n']);
-fprintf(fid,[' DK = ', num2str(MODEL.DK),'\n']);
+fprintf(fid,[' CLOS = ', num2str(MODEL.CLOS),'\n']);
fprintf(fid,[' NON_LIN = ', MODEL.NON_LIN,'\n']);
fprintf(fid,[' mu = ', num2str(MODEL.mu),'\n']);
fprintf(fid,[' nu = ', num2str(MODEL.nu),'\n']);
diff --git a/wk/analysis_2D.m b/wk/analysis_2D.m
index 65c87e85..26c8b526 100644
--- a/wk/analysis_2D.m
+++ b/wk/analysis_2D.m
@@ -6,8 +6,7 @@ if 0
outfile ='';
outfile ='';
outfile ='';
- outfile ='';
- outfile ='';
+ outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi_DGGK/200x100_L_100_Pe_8_Je_4_Pi_8_Ji_4_nB_0.66_nN_1_nu_1e-01_DGGK_mu_1e-03/out.txt';
BASIC.RESDIR = load_marconi(outfile);
end
%%
@@ -150,7 +149,10 @@ set(gcf, 'Position', [100, 100, 900, 800])
for ij = 1:Nje
plt = @(x) squeeze(x(ip,ij,:));
plotname = ['$N_e^{',num2str(Pe(ip)),num2str(Je(ij)),'}$'];
- semilogy(Ts5D,plt(Ne_norm),'DisplayName',plotname); hold on;
+ clr = line_colors(ip,:);
+ lstyle = line_styles(ij);
+ semilogy(Ts5D,plt(Ne_norm),'DisplayName',plotname,...
+ 'Color',clr,'LineStyle',lstyle{1}); hold on;
end
end
grid on; ylabel('$\sum_{k_r,k_z}|N_e^{pj}|$');
@@ -159,7 +161,10 @@ set(gcf, 'Position', [100, 100, 900, 800])
for ij = 1:Nji
plt = @(x) squeeze(x(ip,ij,:));
plotname = ['$N_i^{',num2str(Pi(ip)),num2str(Ji(ij)),'}$'];
- semilogy(Ts5D,plt(Ni_norm),'DisplayName',plotname); hold on;
+ clr = line_colors(ip,:);
+ lstyle = line_styles(ij);
+ semilogy(Ts5D,plt(Ni_norm),'DisplayName',plotname,...
+ 'Color',clr,'LineStyle',lstyle{1}); hold on;
end
end
grid on; ylabel('$\sum_{k_r,k_z}|N_i^{pj}|$');
@@ -174,7 +179,10 @@ set(gcf, 'Position', [100, 100, 900, 800])
for ij = 1:Nji
plt = @(x) squeeze(x(ip,ij,:));
plotname = ['$S_i^{',num2str(ip-1),num2str(ij-1),'}$'];
- semilogy(Ts5D,plt(Si_norm),'DisplayName',plotname); hold on;
+ clr = line_colors(ip,:);
+ lstyle = line_styles(ij);
+ semilogy(Ts5D,plt(Si_norm),'DisplayName',plotname,...
+ 'Color',clr,'LineStyle',lstyle{1}); hold on;
end
end
grid on; xlabel('$t c_s/R$'); ylabel('$\sum_{k_r,k_z}|S_i^{pj}|$'); %legend('show');
@@ -187,10 +195,10 @@ if 0
% FIELD = ni00; FNAME = 'ni';
% FIELD = ne00; FNAME = 'ne';
FIELD = phi; FNAME = 'phi';
-tf = 60; [~,it1] = min(abs(Ts2D-tf));
-tf = 120; [~,it2] = min(abs(Ts2D-tf));
-tf = 250; [~,it3] = min(abs(Ts2D-tf));
-tf = 400; [~,it4] = min(abs(Ts2D-tf));
+tf = 200; [~,it1] = min(abs(Ts2D-tf));
+tf = 600; [~,it2] = min(abs(Ts2D-tf));
+tf =1000; [~,it3] = min(abs(Ts2D-tf));
+tf =2000; [~,it4] = min(abs(Ts2D-tf));
fig = figure; FIGNAME = [FNAME,'_snaps']; set(gcf, 'Position', [100, 100, 1500, 400])
plt = @(x) x;%./max(max(x));
subplot(141)
@@ -276,7 +284,7 @@ fig = figure; FIGNAME = 'space_time_drphi';set(gcf, 'Position', [100, 100, 1200
subplot(211)
yyaxis left
plot(Ts2D,GFlux_ri); hold on
- plot(Ts5D,PFlux_ri,'o');
+% plot(Ts5D,PFlux_ri,'o');
ylabel('$\Gamma_r$'); grid on
ylim([0,1.1*max(GFlux_ri)]);
yyaxis right
@@ -295,34 +303,19 @@ end
%%
if 0
-%% Mode time evolution
-[~,ikr ] = min(abs(kr-dkr));
-[~,ik00] = min(abs(kz));
-[~,idk] = min(abs(kz-dkz));
-[~,ik50] = min(abs(kz-0.1*max(kz)));
-[~,ik75] = min(abs(kz-0.2*max(kz)));
-[~,ik10] = min(abs(kz-0.3*max(kz)));
-plt = @(x) abs(squeeze(x));
-fig = figure; FIGNAME = ['mode_time_evolution',sprintf('_%.2d',JOBNUM)];
- semilogy(Ts2D,plt(Ni00(ikr,ik00,:)),'DisplayName', ...
- ['$k_z = $',num2str(kz(ik00))]); hold on
- semilogy(Ts2D,plt(Ni00(ikr,idk,:)),'DisplayName', ...
- ['$k_z = $',num2str(kz(idk))]); hold on
- semilogy(Ts2D,plt(Ni00(ikr,ik50,:)),'DisplayName', ...
- ['$k_z = $',num2str(kz(ik50))]); hold on
- semilogy(Ts2D,plt(Ni00(ikr,ik75,:)),'DisplayName', ...
- ['$k_z = $',num2str(kz(ik75))]); hold on
- semilogy(Ts2D,plt(Ni00(ikr,ik10,:)),'DisplayName', ...
- ['$k_z = $',num2str(kz(ik10))]); hold on
- xlabel('$t$'); ylabel('$\hat n_i^{00}$'); legend('show');
-title(sprintf('$k_r=$ %1.1f',kr(ikr)))
-save_figure
+%% Space time diagram of moments amplitude
+pj_grid_i = 1:((PMAXI+1)*(JMAXI+1));
+[TY,TX] = meshgrid(Ts5D,pj_grid_i);
+Ni_norm_tmp = squeeze(reshape(Ni_norm,[(PMAXI+1)*(JMAXI+1),1,numel(Ts5D)]));
+fig = figure; FIGNAME = 'space_time_Ni_norm';
+% pclr = image(pj_grid_i,flip(Ts5D),Ni_norm_tmp'); hold on;
+pclr = pcolor(TX,TY,log(Ni_norm_tmp)); hold on; set(pclr, 'edgecolor','none'); %colorbar;
end
%%
if 0
%% Show frame in kspace
-tf = 300; [~,it2] = min(abs(Ts2D-tf)); [~,it5] = min(abs(Ts5D-tf));
+tf = 1000; [~,it2] = min(abs(Ts2D-tf)); [~,it5] = min(abs(Ts5D-tf));
fig = figure; FIGNAME = ['krkz_frame',sprintf('t=%.0f',Ts2D(it2))];set(gcf, 'Position', [100, 100, 700, 600])
subplot(221); plt = @(x) fftshift((abs(x)),2);
pclr = pcolor(fftshift(KR,2),fftshift(KZ,2),plt(PHI(:,:,it2))); set(pclr, 'edgecolor','none'); colorbar;
diff --git a/wk/linear_study.m b/wk/linear_study.m
index f290e719..92ace15e 100644
--- a/wk/linear_study.m
+++ b/wk/linear_study.m
@@ -5,7 +5,7 @@ default_plots_options
%% Set Up parameters
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS
-NU = 1e+0; % Collision frequency
+NU = 0e-01; % Collision frequency
TAU = 1.0; % e/i temperature ratio
ETAB = 0.5;
ETAN = 1.0; % Density gradient
@@ -14,12 +14,12 @@ MU = 1e-3; % Hyper diffusivity coefficient
LAMBDAD = 0.0;
NOISE0 = 1.0e-5;
%% GRID PARAMETERS
-N = 100; % Frequency gridpoints (Nkr = N/2)
-L = 100; % Size of the squared frequency domain
+N = 50; % Frequency gridpoints (Nkr = N/2)
+L = 10; % Size of the squared frequency domain
KREQ0 = 1; % put kr = 0
%% TIME PARMETERS
TMAX = 100; % Maximal time unit
-DT = 5e-2; % Time step
+DT = 1e-2; % Time step
SPS0D = 0.5; % Sampling per time unit for 2D arrays
SPS2D = 1; % Sampling per time unit for 2D arrays
SPS5D = 0.1; % Sampling per time unit for 5D arrays
@@ -29,7 +29,10 @@ JOB2LOAD= 00;
%% OPTIONS
SIMID = 'linear_study'; % Name of the simulation
NON_LIN = 0 *(1-KREQ0); % activate non-linearity (is cancelled if KREQ0 = 1)
-CO = -1; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty)
+CO = -3; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty)
+CLOS = 2; % Closure model (0 : =0 truncation, 1 : n+j = min(nmax,n+j), 2: odd/even adapted)
+KERN = 0; % Kernel model (0 : GK)
+
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% unused
@@ -40,10 +43,11 @@ KPAR = 0.0; % Parellel wave vector component
%% PARAMETER SCANS
if 1
%% Parameter scan over PJ
-% PA = [2, 6, 8, 12];
-% JA = [1, 3, 4, 6];
-PA = [4];
-JA = [2];
+PA = [2, 3, 4, 6, 12, 20];
+JA = [1, 2, 2, 3, 6, 10];
+DTA= DT./sqrt(JA);
+% PA = [4];
+% JA = [2];
Nparam = numel(PA);
param_name = 'PJ';
gamma_Ni = zeros(Nparam,N/2+1);
@@ -52,10 +56,11 @@ for i = 1:Nparam
% Change scan parameter
PMAXE = PA(i); PMAXI = PA(i);
JMAXE = JA(i); JMAXI = JA(i);
+ DT = DTA(i);
setup
% Run linear simulation
system(...
- ['cd ../results/',SIMID,'/',PARAMS,'/; mpirun -np 1 ./../../../bin/helaz; cd ../../../wk']...
+ ['cd ../results/',SIMID,'/',PARAMS,'/; mpirun -np 4 ./../../../bin/helaz; cd ../../../wk']...
)
% Load and process results
load_results
@@ -66,36 +71,7 @@ for i = 1:Nparam
end
gamma_Ni(i,:) = real(gamma_Ni(i,:) .* (gamma_Ni(i,:)>=0.0));
% Clean output
- %system(['rm -r ',BASIC.RESDIR])
-end
-% if 0
-% %% Plot
-% fig = figure; FIGNAME = 'space_time_Ni00';
-% i = 1;
-%
-% [YY, XX] = meshgrid(Ts2D,kz);
-% plt = @(x) squeeze(log(abs(x)))
-% pclr = pcolor(XX,YY,plt(Ni00_ST(i,:,:)));set(pclr, 'edgecolor','none');
-% grid on; xlabel('$k_z$'); ylabel('$t$');
-% title(['$\eta_B=',num2str(ETAB),'$,$P,J=',num2str(PA(i)),',',JA(i),'$'])
-% legend('show')
-% saveas(fig,[SIMDIR,'gamma_Ni_vs_',param_name,'_',PARAMS,'.fig']);
-% saveas(fig,[SIMDIR,'gamma_Ni_vs_',param_name,'_',PARAMS,'.png']);
-% end
-if 0
-%% Plot
-fig = figure; FIGNAME = 'space_time_Ni00';
-i = 3;
-plt = @(x) squeeze((abs(x)));
-for ikr=1:4:numel(kr)/2+1
- NAME = ['$k_z=',num2str(kr(ikr)),'$'];
- semilogy(1:TMAX,plt(Ni00_ST(i,ikr,1:TMAX)), 'DisplayName', NAME); hold on;
-end
-grid on; xlabel('$t c_s/\rho_s$'); ylabel('$|Ni^{00}|$');
-title(['$\eta_B=',num2str(ETAB),'$; $P,J=',num2str(PA(i)),',',num2str(JA(i)),'$, $\nu=',num2str(NU),'$'])
-legend('show');
-saveas(fig,[SIMDIR,'gamma_Ni_vs_',param_name,'_',PARAMS,'.fig']);
-saveas(fig,[SIMDIR,'gamma_Ni_vs_',param_name,'_',PARAMS,'.png']);
+ system(['rm -r ',BASIC.RESDIR])
end
if 1
%% Plot
@@ -111,7 +87,7 @@ for i = 1:Nparam
hold on;
end
grid on; xlabel('$k_z$'); ylabel('$\gamma(N_i^{00})$'); xlim([0.0,max(kr)]);
-title(['$\eta_B=',num2str(ETAB),'$, $\nu=',num2str(NU),'$'])
+title(['$\eta_B=',num2str(ETAB),'$, $\nu_{',CONAME,'}=',num2str(NU),'$, ', CLOSNAME])
legend('show')
saveas(fig,[SIMDIR,'gamma_Ni_vs_',param_name,'_',PARAMS,'.fig']);
saveas(fig,[SIMDIR,'gamma_Ni_vs_',param_name,'_',PARAMS,'.png']);
diff --git a/wk/local_run.m b/wk/local_run.m
index 8a8244a8..61af9e38 100644
--- a/wk/local_run.m
+++ b/wk/local_run.m
@@ -4,7 +4,7 @@ addpath(genpath('../matlab')) % ... add
CLUSTER.TIME = '24:00:00'; % allocation time hh:mm:ss
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS
-NU = 1e+1; % Collision frequency
+NU = 1e-1; % Collision frequency
TAU = 1.0; % e/i temperature ratio
ETAB = 0.5; % Magnetic gradient
ETAN = 1.0; % Density gradient
@@ -14,22 +14,24 @@ NU_HYP = 0.1;
%% GRID PARAMETERS
N = 128; % Frequency gridpoints (Nkr = N/2)
L = 66; % Size of the squared frequency domain
-PMAXE = 3; % Highest electron Hermite polynomial degree
-JMAXE = 2; % Highest '' Laguerre ''
-PMAXI = 3; % Highest ion Hermite polynomial degree
-JMAXI = 2; % Highest '' Laguerre ''
+PMAXE = 4; % Highest electron Hermite polynomial degree
+JMAXE = 3; % Highest '' Laguerre ''
+PMAXI = 4; % Highest ion Hermite polynomial degree
+JMAXI = 3; % Highest '' Laguerre ''
%% TIME PARAMETERS
-TMAX = 100; % Maximal time unit
+TMAX = 500; % Maximal time unit
DT = 3e-2; % Time step
SPS0D = 1/DT; % Sampling per time unit for profiler
SPS2D = 1; % Sampling per time unit for 2D arrays
SPS5D = 1/5; % Sampling per time unit for 5D arrays
SPSCP = 1/10; % Sampling per time unit for checkpoints
-RESTART = 0; % To restart from last checkpoint
-JOB2LOAD= 0;
+RESTART = 1; % To restart from last checkpoint
+JOB2LOAD= 3;
%% OPTIONS
-SIMID = 'test_cleaning'; % Name of the simulation
-CO = -1; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
+% SIMID = 'test_pp2=p_closure'; % Name of the simulation
+SIMID = 'test_truncations'; % Name of the simulation
+CO = -3; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
+CLOS = 0; % Truncation method (0 : =0 closure, 1 : n+j = min(nmax,n+j))
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% unused
diff --git a/wk/marconi_run.m b/wk/marconi_run.m
index f817c8d2..bc527e45 100644
--- a/wk/marconi_run.m
+++ b/wk/marconi_run.m
@@ -19,8 +19,8 @@ NU_HYP = 0.1; % Hyperdiffusivity coefficient
%% GRID PARAMETERS
N = 200; % Frequency gridpoints (Nkr = N/2)
L = 100; % Size of the squared frequency domain
-P = 8; % Electron and Ion highest Hermite polynomial degree
-J = 4; % Electron and Ion highest Laguerre polynomial degree
+P = 6; % Electron and Ion highest Hermite polynomial degree
+J = 3; % Electron and Ion highest Laguerre polynomial degree
%% TIME PARAMETERS
TMAX = 150; % Maximal time unit
DT = 1e-2; % Time step
@@ -28,12 +28,12 @@ SPS0D = 10; % Sampling per time unit for profiler
SPS2D = 1; % Sampling per time unit for 2D arrays
SPS5D = 1/10; % Sampling per time unit for 5D arrays
SPSCP = 1/10; % Sampling per time unit for checkpoints
-RESTART = 0; % To restart from last checkpoint
+RESTART = 1; % To restart from last checkpoint
JOB2LOAD= 0;
%% OPTIONS
SIMID = 'Marconi_DGGK'; % Name of the simulation
CO = -3; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
-
+CLOS = 0; % Truncation method (0 : =0 closure, 1 : n+j = min(nmax,n+j))
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--
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