From c6b225a34e7c1307b8380f2bb9f21bbeee4a76d7 Mon Sep 17 00:00:00 2001
From: Antoine Cyril David Hoffmann <ahoffman@spcpc606.epfl.ch>
Date: Fri, 26 Jun 2020 17:14:29 +0200
Subject: [PATCH] renamed benchmark.m
---
wk/MOLI_comparison.m | 131 -------------------------------------------
1 file changed, 131 deletions(-)
delete mode 100644 wk/MOLI_comparison.m
diff --git a/wk/MOLI_comparison.m b/wk/MOLI_comparison.m
deleted file mode 100644
index 8317eaa3..00000000
--- a/wk/MOLI_comparison.m
+++ /dev/null
@@ -1,131 +0,0 @@
-SIMID = 'MOLI_Comparison'; % Name of the simulations
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%% outputs options
-OUTPUTS.nsave_0d = 0;
-OUTPUTS.nsave_1d = 0;
-OUTPUTS.nsave_2d = 100;
-OUTPUTS.nsave_5d = 0;
-OUTPUTS.write_Ni00 = '.true.';
-OUTPUTS.write_moments = '.true.';
-OUTPUTS.write_phi = '.true.';
-OUTPUTS.write_doubleprecision = '.true.';
-OUTPUTS.resfile0 = '''results''';
-%% Grid parameters
-GRID.pmaxe = 81;
-GRID.jmaxe = 20;
-GRID.pmaxi = 81;
-GRID.jmaxi = 20;
-GRID.nkr = 1;
-GRID.krmin = 0.;
-GRID.krmax = 0.;
-GRID.nkz = 1;
-GRID.kzmin = 1.0;
-GRID.kzmax = 1.0;
-%% Model parameters
-MODEL.nu = 0.001;
-MODEL.tau_e = 1.0;
-MODEL.tau_i = 1.0;
-MODEL.sigma_e = 0.0233380;
-MODEL.sigma_i = 1.0;
-MODEL.q_e =-1.0;
-MODEL.q_i = 1.0;
-MODEL.eta_n = 1.0;
-MODEL.eta_T = 0.0;
-MODEL.eta_B = 0.5;
-MODEL.lambdaD = 0.0;
-%% Time integration and intialization parameters
-TIME_INTEGRATION.numerical_scheme = '''RK4''';
-BASIC.nrun = 100000;
-BASIC.dt = 0.01;
-BASIC.tmax = 50.0;
-INITIAL.initback_moments = 0.01;
-INITIAL.initnoise_moments = 0.;
-INITIAL.iseed = 42;
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%% Write input file
-INPUT = write_fort90(OUTPUTS,GRID,MODEL,INITIAL,TIME_INTEGRATION,BASIC);
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%% Run HeLaZ
-nproc = 1;
-EXEC = ' ../bin/helaz ';
-RUN = ['mpirun -np ' num2str(nproc)];
-CMD = [RUN, EXEC, INPUT];
-system(CMD);
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%% Run MOLI with same input parameters
-run ../matlab/MOLI_time_solver
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%% Analysis and basic figures
-SAVEFIG = 1;
-filename = 'results_00.h5';
-TITLE = [];
-TITLE = [TITLE,'$\eta_n=',num2str(1.0/MODEL.eta_n),'$, '];
-TITLE = [TITLE,'$\eta_B=',num2str(MODEL.eta_B),'$, '];
-TITLE = [TITLE, '$\nu=',num2str(MODEL.nu),'$, '];
-TITLE = [TITLE, '$(P,J)=(',num2str(GRID.pmaxe),',',num2str(GRID.jmaxe),')$'];
-%% Nipj
-
-moment = 'Ni00';
-
-kr = h5read(filename,['/data/var2d/' moment '/coordkr']);
-kz = h5read(filename,['/data/var2d/' moment '/coordkz']);
-timeNi = h5read(filename,'/data/var2d/time');
-Nipj = zeros(numel(timeNi),numel(kr),numel(kz));
-for it = 1:numel(timeNi)
- tmp = h5read(filename,['/data/var2d/', moment,'/', num2str(it,'%06d')]);
- Nipj(it,:,:) = tmp.real + 1i * tmp.imaginary;
-end
-
-%% phi
-timephi = h5read(filename,'/data/var2d/time');
-kr = h5read(filename,'/data/var2d/phi/coordkr');
-kz = h5read(filename,'/data/var2d/phi/coordkz');
-phiHeLaZ = zeros(numel(timephi),numel(kr),numel(kz));
-for it = 1:numel(timephi)
- tmp = h5read(filename,['/data/var2d/phi/' num2str(it,'%06d')]);
- phiHeLaZ(it,:,:) = tmp.real + 1i * tmp.imaginary;
-end
-
-timephiMOLI = results.timeRK4;
-phiMOLI = zeros(size(timephiMOLI));
-for it = 1:numel(timephiMOLI)
- phiMOLI(it) = get_phi(results.NapjRK4(it,:),params,options);
-end
-
-fig = figure;
-%HeLaZ results
-semilogy(timephi,abs(phiHeLaZ),'-','DisplayName','HeLaZ RK4')
-title(TITLE);
-hold on
-%MOLI results
-semilogy(timephiMOLI,abs(phiMOLI),'--','DisplayName','MOLI RK4')
-grid on
-xlabel('$t$')
-ylabel('$|\phi|$')
-legend('show')
-if SAVEFIG; FIGNAME = 'phi'; save_figure; end;
-
-
-fig = figure;
-%HeLaZ results
-x1 = timeNi;
-y1 = abs(Nipj);
-semilogy(x1,y1,'-','DisplayName','HeLaZ RK4')
-hold on
-%MOLI results
-x2 = results.timeRK4;
-y2 = abs(results.NapjRK4(:,1));
-semilogy(x2(1:100:end),y2(1:100:end),'--','DisplayName','MOLI RK4');
-title(TITLE);
-grid on
-legend('show')
-xlabel('$t$')
-ylabel(['$|',moment,'|$'])
-if SAVEFIG; FIGNAME = 'Ni00'; save_figure; end;
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\ No newline at end of file
--
GitLab