From d1b82f9414b6a79e7030b1ac1411fa45b8918c09 Mon Sep 17 00:00:00 2001
From: Antoine Cyril David Hoffmann <ahoffman@spcpc606.epfl.ch>
Date: Tue, 12 Jan 2021 15:47:39 +0100
Subject: [PATCH] update matlab scripts
---
matlab/load_params.m | 4 +++-
matlab/write_fort90.m | 1 +
wk/analysis_2D.m | 4 ++--
wk/debug_script.m | 19 +++++++++----------
wk/marconi_run.m | 8 ++++----
wk/setup.m | 1 +
6 files changed, 20 insertions(+), 17 deletions(-)
diff --git a/matlab/load_params.m b/matlab/load_params.m
index 41b51696..bec47edf 100644
--- a/matlab/load_params.m
+++ b/matlab/load_params.m
@@ -3,8 +3,10 @@ if CONAME == -1
CONAME = 'FC';
elseif CONAME == 0
CONAME = 'LB';
-elseif CONAME == 1
+elseif CONAME == -2
CONAME = 'DG';
+elseif CONAME == -3
+ CONAME = 'DGGK';
end
ETAB = h5readatt(filename,'/data/input','eta_B');
ETAN = h5readatt(filename,'/data/input','eta_n');
diff --git a/matlab/write_fort90.m b/matlab/write_fort90.m
index b73460d9..23c331ca 100644
--- a/matlab/write_fort90.m
+++ b/matlab/write_fort90.m
@@ -7,6 +7,7 @@ fprintf(fid,'&BASIC\n');
fprintf(fid,[' nrun = ', num2str(BASIC.nrun),'\n']);
fprintf(fid,[' dt = ', num2str(BASIC.dt),'\n']);
fprintf(fid,[' tmax = ', num2str(BASIC.tmax),'\n']);
+fprintf(fid,[' RESTART = ', BASIC.RESTART,'\n']);
fprintf(fid,[' maxruntime = ', num2str(BASIC.maxruntime),'\n']);
fprintf(fid,'/\n');
diff --git a/wk/analysis_2D.m b/wk/analysis_2D.m
index 4d5757cd..de32193d 100644
--- a/wk/analysis_2D.m
+++ b/wk/analysis_2D.m
@@ -3,8 +3,8 @@ if 0
%%
outfile ='';
outfile ='';
- outfile ='';
- outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi/200x100_L_100_Pe_2_Je_1_Pi_2_Ji_1_nB_0.4_nN_1_nu_1e-01_FC_mu_1e-03/out.txt';
+ outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi/200x100_L_100_Pe_2_Je_1_Pi_2_Ji_1_nB_0.66_nN_1_nu_1e-01_FC_mu_1e-03/out.txt';
+% outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/Marconi/200x100_L_100_Pe_8_Je_4_Pi_8_Ji_4_nB_0.66_nN_1_nu_1e-01_FC_mu_1e-04/out.txt';
BASIC.RESDIR = load_marconi(outfile);
end
%%
diff --git a/wk/debug_script.m b/wk/debug_script.m
index ea5d3cae..7c614b01 100644
--- a/wk/debug_script.m
+++ b/wk/debug_script.m
@@ -1,11 +1,10 @@
-clear all;
addpath(genpath('../matlab')) % ... add
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Set Up parameters
CLUSTER.TIME = '24:00:00'; % allocation time hh:mm:ss
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS
-NU = 1e1; % Collision frequency
+NU = 1e+1; % Collision frequency
TAU = 1.0; % e/i temperature ratio
ETAB = 0.5; % Magnetic gradient
ETAN = 1.0; % Density gradient
@@ -15,22 +14,22 @@ NU_HYP = 0.1;
%% GRID PARAMETERS
N = 128; % Frequency gridpoints (Nkr = N/2)
L = 66; % Size of the squared frequency domain
-PMAXE = 2; % Highest electron Hermite polynomial degree
-JMAXE = 1; % Highest '' Laguerre ''
-PMAXI = 2; % Highest ion Hermite polynomial degree
-JMAXI = 1; % Highest '' Laguerre ''
+PMAXE = 3; % Highest electron Hermite polynomial degree
+JMAXE = 2; % Highest '' Laguerre ''
+PMAXI = 3; % Highest ion Hermite polynomial degree
+JMAXI = 2; % Highest '' Laguerre ''
%% TIME PARAMETERS
-TMAX = 400; % Maximal time unit
+TMAX = 150; % Maximal time unit
DT = 3e-2; % Time step
SPS0D = 1/DT; % Sampling per time unit for profiler
-SPS2D = 2; % Sampling per time unit for 2D arrays
+SPS2D = 1; % Sampling per time unit for 2D arrays
SPS5D = 1/5; % Sampling per time unit for 5D arrays
SPSCP = 1/10; % Sampling per time unit for checkpoints
RESTART = 0; % To restart from last checkpoint
JOB2LOAD= 0;
%% OPTIONS
-SIMID = 'test_precomp_kernel'; % Name of the simulation
-CO = -1; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
+SIMID = 'test_DGGK'; % Name of the simulation
+CO = -3; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% unused
diff --git a/wk/marconi_run.m b/wk/marconi_run.m
index b2b28af6..e0011758 100644
--- a/wk/marconi_run.m
+++ b/wk/marconi_run.m
@@ -4,7 +4,7 @@ addpath(genpath('../matlab')) % ... add
%% Set Up parameters
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% CLUSTER PARAMETERS
-CLUSTER.TIME = '24:00:00'; % allocation time hh:mm:ss
+CLUSTER.TIME = '02:00:00'; % allocation time hh:mm:ss
CLUSTER.NODES = '1'; % MPI process
CLUSTER.CPUPT = '1'; % CPU per task
CLUSTER.NTPN = '24'; % N tasks per node
@@ -19,8 +19,8 @@ NU_HYP = 0.1; % Hyperdiffusivity coefficient
%% GRID PARAMETERS
N = 200; % Frequency gridpoints (Nkr = N/2)
L = 100; % Size of the squared frequency domain
-P = 8; % Electron and Ion highest Hermite polynomial degree
-J = 4; % Electron and Ion highest Laguerre polynomial degree
+P = 2; % Electron and Ion highest Hermite polynomial degree
+J = 1; % Electron and Ion highest Laguerre polynomial degree
%% TIME PARAMETERS
TMAX = 400; % Maximal time unit
DT = 1e-2; % Time step
@@ -31,7 +31,7 @@ SPSCP = 1/10; % Sampling per time unit for checkpoints
RESTART = 0; % To restart from last checkpoint
JOB2LOAD= 0;
%% OPTIONS
-SIMID = 'Marconi_new_AA'; % Name of the simulation
+SIMID = 'Marconi_new_truncation'; % Name of the simulation
CO = -1; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty)
diff --git a/wk/setup.m b/wk/setup.m
index 7e4ec8eb..2d0dd8c0 100644
--- a/wk/setup.m
+++ b/wk/setup.m
@@ -59,6 +59,7 @@ INITIAL.iemat_file = ...
if (CO == 0); CONAME = 'LB';
elseif(CO == -1); CONAME = 'FC';
elseif(CO == -2); CONAME = 'DG';
+elseif(CO == -3); CONAME = 'DGGK';
end
degngrad = ['Pe_',num2str(PMAXE),'_Je_',num2str(JMAXE),...
'_Pi_',num2str(PMAXI),'_Ji_',num2str(JMAXI),...
--
GitLab