From d58bd6d2a60894384631337ea68f0ce2b0398772 Mon Sep 17 00:00:00 2001 From: Antoine Hoffmann <antoine.hoffmann@epfl.ch> Date: Mon, 20 Mar 2023 14:44:14 +0100 Subject: [PATCH] clean --- testcases/zpinch_example/gyacomo_1 | 1 - testcases/zpinch_example_new/fort.90 | 101 --------------------- testcases/zpinch_example_new/fort_00.90 | 83 ----------------- testcases/zpinch_example_new/gyacomo_debug | 1 - wk/analysis_gyacomo.m | 2 +- 5 files changed, 1 insertion(+), 187 deletions(-) delete mode 120000 testcases/zpinch_example/gyacomo_1 delete mode 100644 testcases/zpinch_example_new/fort.90 delete mode 100644 testcases/zpinch_example_new/fort_00.90 delete mode 120000 testcases/zpinch_example_new/gyacomo_debug diff --git a/testcases/zpinch_example/gyacomo_1 b/testcases/zpinch_example/gyacomo_1 deleted file mode 120000 index 2fd67105..00000000 --- a/testcases/zpinch_example/gyacomo_1 +++ /dev/null @@ -1 +0,0 @@ -../../../gyacomo_1/bin/gyacomo \ No newline at end of file diff --git a/testcases/zpinch_example_new/fort.90 b/testcases/zpinch_example_new/fort.90 deleted file mode 100644 index 5c5bd290..00000000 --- a/testcases/zpinch_example_new/fort.90 +++ /dev/null @@ -1,101 +0,0 @@ -&BASIC - nrun = 99999999 - dt = 0.01 - tmax = 50 - maxruntime = 356400 - job2load = -1 -/ -&GRID - pmax = 4 - jmax = 2 - Nx = 128 - Lx = 200 - Ny = 48 - Ly = 60 - Nz = 1 - SG = .f. - Nexc = 1 -/ -&GEOMETRY - geom = 'Z-pinch' - q0 = 0.0 - shear = 0.0 - eps = 0.0 - kappa = 1.0 - s_kappa= 0.0 - delta = 0.0 - s_delta= 0.0 - zeta = 0.0 - s_zeta = 0.0 - parallel_bc = 'shearless' - shift_y= 0.0 -/ -&OUTPUT_PAR - dtsave_0d = 0.1 - dtsave_1d = -1 - dtsave_2d = -1 - dtsave_3d = 1 - dtsave_5d = 10 - write_doubleprecision = .f. - write_gamma = .t. - write_hf = .t. - write_phi = .t. - write_Na00 = .t. - write_Napj = .t. - write_dens = .t. - write_fvel = .t. - write_temp = .t. -/ -&MODEL_PAR - ! Collisionality - CLOS = 0 - NL_CLOS = -1 - LINEARITY = 'nonlinear' - Na = 2 ! number of species - mu_x = 1.0 - mu_y = 1.0 - N_HD = 4 - mu_z = 0.0 - HYP_V = 'hypcoll' - mu_p = 0.0 - mu_j = 0.0 - nu = 0.1 - beta = 0.0 - ADIAB_E = .f. - tau_e = 1.0 -/ -&SPECIES - ! ions - name_ = 'ions' - tau_ = 1.0 - sigma_= 1.0 - q_ = 1.0 - k_N_ = 2.0 - k_T_ = 0.4 -/ -&SPECIES - ! electrons - name_ = 'electrons' - tau_ = 1.0 - sigma_= 0.023338 - q_ = -1.0 - k_N_ = 2.0 - k_T_ = 0.4 -/ - -&COLLISION_PAR - collision_model = 'DG' !DG/SG/PA/LD (dougherty, sugama, pitch angle, landau) - GK_CO = .t. - INTERSPECIES = .true. - mat_file = 'gk_sugama_P_20_J_10_N_150_kpm_8.0.h5' -/ -&INITIAL_CON - INIT_OPT = 'phi' - ACT_ON_MODES = 'donothing' - init_background = 0.0 - init_noiselvl = 0.005 - iseed = 42 -/ -&TIME_INTEGRATION_PAR - numerical_scheme = 'RK4' -/ diff --git a/testcases/zpinch_example_new/fort_00.90 b/testcases/zpinch_example_new/fort_00.90 deleted file mode 100644 index 5864634f..00000000 --- a/testcases/zpinch_example_new/fort_00.90 +++ /dev/null @@ -1,83 +0,0 @@ -&BASIC - nrun = 100000000 - dt = 0.01 - tmax = 50 - maxruntime = 356400 -/ -&GRID - pmaxe = 4 - jmaxe = 2 - pmaxi = 4 - jmaxi = 2 - Nx = 128 - Lx = 200 - Ny = 48 - Ly = 60 - Nz = 1 - SG = .f. -/ -&GEOMETRY - geom = 'Z-pinch' - q0 = 0 - shear = 0 - eps = 0 - parallel_bc = 'shearless' -/ -&OUTPUT_PAR - nsave_0d = 10 - nsave_1d = -1 - nsave_2d = -1 - nsave_3d = 100 - nsave_5d = 1000 - write_doubleprecision = .f. - write_gamma = .t. - write_hf = .t. - write_phi = .t. - write_Na00 = .f. - write_Napj = .t. - write_Sapj = .f. - write_dens = .t. - write_temp = .t. - job2load = -1 -/ -&MODEL_PAR - ! Collisionality - CLOS = 0 - NL_CLOS = -1 - LINEARITY = 'nonlinear' - KIN_E = .t. - mu_x = 1.0 - mu_y = 1.0 - N_HD = 4 - mu_z = 0.0 - mu_p = 0 - mu_j = 0 - nu = 0.1 - tau_e = 1 - tau_i = 1 - sigma_e = 0.023338 - sigma_i = 1 - q_e = -1 - q_i = 1 - K_Ne = 2.0 - K_Te = 0.4 - K_Ni = 2.0 - K_Ti = 0.4 - beta = 0 -/ -&COLLISION_PAR - collision_model = 'DG' !DG/SG/PA/LD (dougherty, sugama, pitch angle, landau) - GK_CO = .true. - INTERSPECIES = .true. - !mat_file = 'gk_sugama_P_20_J_10_N_150_kpm_8.0.h5' -/ -&INITIAL_CON - INIT_OPT = 'phi' - ACT_ON_MODES = 'donothing' - init_background = 0 - init_noiselvl = 0.005 - iseed = 42 -/ -&TIME_INTEGRATION_PAR - numerical_scheme = 'RK4' -/ diff --git a/testcases/zpinch_example_new/gyacomo_debug b/testcases/zpinch_example_new/gyacomo_debug deleted file mode 120000 index 363e139a..00000000 --- a/testcases/zpinch_example_new/gyacomo_debug +++ /dev/null @@ -1 +0,0 @@ -../../bin/gyacomo_debug \ No newline at end of file diff --git a/wk/analysis_gyacomo.m b/wk/analysis_gyacomo.m index 876f5aff..1ff98e2e 100644 --- a/wk/analysis_gyacomo.m +++ b/wk/analysis_gyacomo.m @@ -1,6 +1,6 @@ %% UNCOMMENT FOR TUTORIAL gyacomodir = pwd; gyacomodir = gyacomodir(1:end-2); % get code directory -resdir = '../testcases/zpinch_example_new/'; %Name of the directory where the results are located +resdir = '../testcases/zpinch_example/'; %Name of the directory where the results are located PARTITION =''; JOBNUMMIN = 00; JOBNUMMAX = 10; %% -- GitLab