add nverbose throughout tcv2ids2database

add timings for cocos transformation for nverbose >=3

matlab/TCV_IMAS/ids2database.m

@@ -107,7 +107,7 @@ try
 
   %% Put the field
   for i=1:length(ids_names_ok)
-    ids_to_get = ids_names_ok{i}
+    ids_to_get = ids_names_ok{i};
     if occurence <= 0
       ids_put(idx,ids_to_get,ids2put.(ids_to_get));
     else

matlab/TCV_IMAS/tcv2ids.m

@@ -19,6 +19,7 @@ function [ids_from_tcv,varargout] = tcv2ids(shot,varargin);
 %           'cocos_out': (default 11) cocos to transform ids from TCV cocos_in=17 to cocos_out
 %           'ipsign_out': if a specific sign fo Ip is desired in output within the cocos_out system (default 0=no specific sign)
 %           'b0sign_out': if a specific sign fo B0 is desired in output within the cocos_out system (default 0=no specific sign)
+%           'nverbose': (default 1), set it to 3 to have more messages, for example about not fully valid nodes when doing transformation (empty or Nans)
 %
 % Outputs
 % varargout{1}: return also the ids in array of structure with the names, to allow easy use of plotallids
@@ -34,6 +35,7 @@ p.addOptional('error_bar', 'delta', @(x) isempty(x) || ischar(x) ); % char or ce
 p.addOptional('cocos_out', 11, @(x) isempty(x) || isnumeric(x) ); % char
 p.addOptional('ipsign_out', 0, @(x) isempty(x) || (x==0 | x==-1 | x==+1) ); % char
 p.addOptional('b0sign_out', 0, @(x) isempty(x) || (x==0 | x==-1 | x==+1) ); % char
+p.addOptional('nverbose', 1, @(x) isempty(x) || isnumeric(x) ); 
 
 p.parse;
 defaults_tcv2ids = p.Results; % to keep track of defaults
@@ -91,7 +93,7 @@ end
 for i=1:length(params_tcv2ids.ids_names)
   ids_to_get = params_tcv2ids.ids_names{i};
   tmp = gdat(shot,'ids','source',ids_to_get,'machine','tcv','error_bar',params_tcv2ids.error_bar,'cocos_out',params_tcv2ids.cocos_out, ...
-          'b0sign_out',params_tcv2ids.b0sign_out,'ipsign_out',params_tcv2ids.ipsign_out);
+          'b0sign_out',params_tcv2ids.b0sign_out,'ipsign_out',params_tcv2ids.ipsign_out,'nverbose',params_tcv2ids.nverbose);
   ids_from_tcv.(ids_to_get) = tmp.(ids_to_get);
   ids_from_tcv.([ids_to_get '_description']) = tmp.([ids_to_get '_description']);
 end

matlab/TCV_IMAS/tcv2ids2database.m

@@ -53,6 +53,7 @@ p.addOptional('tree_majorversion', '3', @(x) isempty(x) || ischar(x) ); % char
 p.addOptional('cocos_out', 11, @(x) isempty(x) || isnumeric(x) ); % char
 p.addOptional('ipsign_out', 0, @(x) isempty(x) || (x==0 | x==-1 | x==+1) ); % char
 p.addOptional('b0sign_out', 0, @(x) isempty(x) || (x==0 | x==-1 | x==+1) ); % char
+p.addOptional('nverbose', 1, @(x) isempty(x) || isnumeric(x) );
 
 p.parse;
 defaults_tcv2ids2database = p.Results; % to keep track of defaults

matlab/TCV_IMAS/tcv_get_ids_core_profiles.m

@@ -304,5 +304,6 @@ end
 % cocos automatic transform
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_core_profiles,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_core_profiles,'core_profiles',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end

matlab/TCV_IMAS/tcv_get_ids_ec_antennas.m

@@ -113,5 +113,6 @@ end
 % cocos automatic transform
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_ec_antennas,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_ec_antennas,'ec_antennas',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end

matlab/TCV_IMAS/tcv_get_ids_equilibrium.m

@@ -406,5 +406,6 @@ end
 % cocos automatic transform
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_equilibrium,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_equilibrium,'equilibrium',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end

matlab/TCV_IMAS/tcv_get_ids_magnetics.m

@@ -21,5 +21,6 @@ end
 % cocos automatic transform
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_magnetics,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_magnetics,'magnetics',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end

matlab/TCV_IMAS/tcv_get_ids_nbi.m

@@ -129,5 +129,6 @@ end
 % cocos automatic transform
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_nbi,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_nbi,'nbi',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end

matlab/TCV_IMAS/tcv_get_ids_pf_active.m

@@ -21,5 +21,6 @@ ids_pf_active.vertical_force = {};
 % cocos automatic transform
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_pf_active,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_pf_active,'pf_active',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end

matlab/TCV_IMAS/tcv_get_ids_tf.m

@@ -36,5 +36,6 @@ ids_tf.field_map = {};
 % cocos automatic transform
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_tf,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_tf,'tf',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end

matlab/TCV_IMAS/tcv_get_ids_wall.m

@@ -26,5 +26,6 @@ ids_description = [];
 % cocos automatic transform (should have nothing to do for wall)
 if exist('ids_generic_cocos_nodes_transformation_symbolic') == 2
   [ids_wall,cocoscoeff]=ids_generic_cocos_nodes_transformation_symbolic(ids_wall,'wall',gdat_params.cocos_in, ...
-          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in,gdat_params.error_bar);
+          gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ...
+          gdat_params.error_bar,gdat_params.nverbose);
 end