function [ids_thomson_scattering,ids_thomson_scattering_description] = tcv_get_ids_thomson_scattering(shot, ids_thomson_scattering_empty, gdat_params,varargin) % % [ids_thomson_scattering] = tcv_get_ids_thomson_scattering(shot, ids_thomson_scattering_empty,varargin); % % Get the thomson scattering diagnostics data % % ids_thomson_scattering_empty should at least be the empty thomson_scattering ids structure in input % % gdat_params: gdat_data.gdat_params to get all params passed from original call, in particular error_bar options % error_bar = 'delta'; if exist('gdat_params','var') && isfield(gdat_params,'error_bar') && ~isempty(gdat_params.error_bar) error_bar = gdat_params.error_bar; end if exist('gdat_params','var') [ids_thomson_scattering, ~] = tcv_ids_headpart(shot, ids_thomson_scattering_empty,'thomson_scattering','homogeneous_time',0,'gdat_params',gdat_params,varargin{:}); % Main system params_eff = gdat_params; params_eff.edge = 0; params_eff.data_request = 'ne'; ne0 = gdat_tcv(shot,params_eff); params_eff.data_request = 'te'; te0 = gdat_tcv(shot,params_eff); % Edge system params_eff = gdat_params; params_eff.edge = 1; params_eff.data_request = 'ne'; ne1 = gdat_tcv(shot,params_eff); params_eff.data_request = 'te'; te1 = gdat_tcv(shot,params_eff); else [ids_thomson_scattering, ~] = tcv_ids_headpart(shot, ids_thomson_scattering_empty,'thomson_scattering','homogeneous_time',0,varargin{:}); % Main system ne0 = gdat_tcv(shot, 'ne', 'edge',0); te0 = gdat_tcv(shot, 'te', 'edge',0); % Edge system ne1 = gdat_tcv(shot, 'ne', 'edge',1); te1 = gdat_tcv(shot, 'te', 'edge',1); end ids_thomson_scattering_description = struct(); status = ~ischar(ne0.data) & ~ischar(te0.data) & ~ischar(ne1.data) & ~ischar(te1.data); if status nchannel0 = size(ne0.data_raw,1); nchannel1 = size(ne1.data_raw,1); nchannel = nchannel0 + nchannel1; ids_thomson_scattering.channel(1:nchannel) = ids_thomson_scattering.channel(1); for system = {'main','edge'} switch system{1} case 'main', nchannel = nchannel0; offset = 0; ne = ne0; te = te0; edge_str = ')'; case 'edge', nchannel = nchannel1; offset = nchannel0; ne = ne1; te = te1; edge_str = ',''edge'',1'; end for ii = 1:nchannel jj = ii+offset; ids_thomson_scattering.channel{jj}.name = sprintf('%s %03d',system{1},ii); ids_thomson_scattering_description.channel{jj}.name = sprintf('TS system %s, index from order in \results::thomson tree',system{1}); ids_thomson_scattering.channel{jj}.identifier = sprintf('Z=%+5.3gm',ne.x(ii)); ids_thomson_scattering_description.channel{jj}.identifier = 'Identifier from Vertical position'; ids_thomson_scattering.channel{jj}.position.r = 0.9; ids_thomson_scattering_description.channel{jj}.position.r = 'Fixed R=0.9m'; ids_thomson_scattering.channel{jj}.position.z = ne.x(ii); ids_thomson_scattering_description.channel{jj}.position.z = ['Vertical position ne.x from gdat_tcv(shot,''ne'',',edge_str,')']; ids_thomson_scattering.channel{jj}.t_e.data = reshape(te.data(ii,:),[],1); ids_thomson_scattering_description.channel{jj}.t_e.data = ['te.data from gdat_tcv(shot,''te'',',edge_str,')']; if (ids_thomson_scattering.ids_properties.homogeneous_time == 0) ids_thomson_scattering.channel{jj}.t_e.time = reshape(te.t,[],1); ids_thomson_scattering_description.channel{jj}.t_e.time = ['te.t from gdat_tcv(shot,''te'',',edge_str,')']; end ids_thomson_scattering.channel{jj}.n_e.data = reshape(ne.data_raw(ii,:),[],1); ids_thomson_scattering_description.channel{jj}.n_e.data = ['ne.data_raw from gdat_tcv(shot,''ne'',',edge_str,')']; if (ids_thomson_scattering.ids_properties.homogeneous_time == 0) ids_thomson_scattering.channel{jj}.n_e.time = reshape(ne.t,[],1); ids_thomson_scattering_description.channel{jj}.n_e.time = ['ne.t from gdat_tcv(shot,''ne'',',edge_str,')']; end switch error_bar case 'delta' ids_thomson_scattering.channel{jj}.t_e.data_error_upper = reshape(abs(te.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.t_e.data_error_upper = ['abs(te.error_bar) from gdat_tcv(shot,''te'',',edge_str,') for case ',error_bar]; ids_thomson_scattering.channel{jj}.n_e.data_error_upper = reshape(abs(ne.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.n_e.data_error_upper = ['abs(ne.error_bar) from gdat_tcv(shot,''ne'',',edge_str,') for case ',error_bar]; case 'delta_with_lower' ids_thomson_scattering.channel{jj}.t_e.data_error_upper = reshape(abs(te.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.t_e.data_error_upper = ['abs(te.error_bar) from gdat_tcv(shot,''te'',',edge_str,') for case ',error_bar]; ids_thomson_scattering.channel{jj}.t_e.data_error_lower = reshape(abs(te.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.t_e.data_error_lower = ['abs(te.error_bar) from gdat_tcv(shot,''te'',',edge_str,') for case ',error_bar]; ids_thomson_scattering.channel{jj}.n_e.data_error_upper = reshape(abs(ne.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.n_e.data_error_upper = ['abs(ne.error_bar) from gdat_tcv(shot,''ne'',',edge_str,') for case ',error_bar]; ids_thomson_scattering.channel{jj}.n_e.data_error_lower = reshape(abs(ne.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.n_e.data_error_lower = ['abs(ne.error_bar) from gdat_tcv(shot,''ne'',',edge_str,') for case ',error_bar]; case 'added' ids_thomson_scattering.channel{jj}.t_e.data_error_upper = reshape(te.data(ii,:)+abs(te.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.t_e.data_error_upper = ['te.data+abs(te.error_bar) from gdat_tcv(shot,''te'',',edge_str,') for case ',error_bar]; ids_thomson_scattering.channel{jj}.t_e.data_error_lower = reshape(te.data(ii,:)-abs(te.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.t_e.data_error_lower = ['te.data-abs(te.error_bar) from gdat_tcv(shot,''te'',',edge_str,') for case ',error_bar]; ids_thomson_scattering.channel{jj}.n_e.data_error_upper = reshape(ne.data(ii,:)+abs(ne.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.n_e.data_error_upper = ['ne.data+abs(ne.error_bar) from gdat_tcv(shot,''ne'',',edge_str,') for case ',error_bar]; ids_thomson_scattering.channel{jj}.n_e.data_error_lower = reshape(ne.data(ii,:)-abs(ne.error_bar(ii,:)),[],1); ids_thomson_scattering_description.channel{jj}.n_e.data_error_lower = ['ne.data-abs(ne.error_bar) from gdat_tcv(shot,''ne'',',edge_str,') for case ',error_bar]; end end end if (ids_thomson_scattering.ids_properties.homogeneous_time == 1) ids_thomson_scattering.time = ne0.time(:); ids_thomson_scattering_description.time = 'ne.t from gdat_tcv(shot,''ne'')'; end end % make arrays not filled in empty % cocos automatic transform if false && exist('ids_generic_cocos_nodes_transformation_symbolic','file') % Disabled until added to COCOStransform [ids_thomson_scattering,~]=ids_generic_cocos_nodes_transformation_symbolic(ids_thomson_scattering,'thomson_scattering',gdat_params.cocos_in, ... gdat_params.cocos_out,gdat_params.ipsign_out,gdat_params.b0sign_out,gdat_params.ipsign_in,gdat_params.b0sign_in, ... gdat_params.error_bar,gdat_params.nverbose); end