function [gdat_data,gdat_params,error_status,varargout] = gdat_tcv(shot,data_request,varargin) % % function [gdat_data,gdat_params,error_status,varargout] = gdat(shot,data_request,varargin) % % Aim: get data from a given machine using full path or keywords. % data_request are and should be case independent (transformed in lower case in the function and outputs) % % If no inputs are provided, return the list of available pre-defined data_request in gdat_data and default parameters gdat_params % % Inputs: % % no inputs: return default parameters in a structure form in gdat_params % shot: shot number % data_request: keyword (like 'ip') or trace name or structure containing all parameters but shot number % varargin{i},varargin{i+1},i=1:nargin-2: additional optional parameters given in pairs: param_name, param_value % The optional parameters list might depend on the data_request % examples of optional parameters: % 'plot',1 (plot is set by default to 0) % 'machine','TCV' (the default machine is the local machine) % % % Outputs: % % gdat_data: structure containing the data, the time trace if known and other useful information % gdat_data.t : time trace % gdat_data.data: requested data values % gdat_data.dim : values of the various coordinates related to the dimensions of .data(:,:,...) % note that one of the dim is the time, replicated in .t for clarity % gdat_data.dimunits : units of the various dimensions, 'dimensionless' if dimensionless % gdat_data.error_bar : if provided % gdat_data.gdat_call : list of parameters provided in the gdat call (so can be reproduced) % gdat_data.shot: shot number % gdat_data.machine: machine providing the data % gdat_data.gdat_request: keyword for gdat if relevant % gdat_data.data_fullpath: full path to the data node if known and relevant, or relevant expression called if relevant % gdat_data.gdat_params: copy gdat_params for completeness (gdat_params contains a .help structure detailing each parameter) % gdat_data.xxx: any other relevant information % % gdat_params contains the options relevant for the called data_request. It also contains a help structure for each option % eg.: param1 in gdat_params.param1 and help in gdat_params.help.param1 % % Note for liuqe parameter: At this time we have liuqe_fortran (which used to be the default) and liuqe_matlab (which is new and now becomes/is the default) % We still have liuqe1, 2 and 3 nodes for either of them, so you can choose: % 'liuqe',1 (2 or 3): to get the default liuqe 1, 2 or 3 (which is now the matlab version) % 'liuqe',11 (12 or 13): to get liuqe_fortran nodes 1, 2 or 3 % 'liuqe',21 (22 or 23): to get liuqe_matlab nodes 1, 2 or 3 (may be needed if we set the default to liuqe_fortran for old shots) % 'liuqe',-1 : to get FBTE result % % Examples: % (should add working examples for various machines (provides working shot numbers for each machine...)) % % [a1,a2]=gdat; % a2.data_request = 'Ip'; % a3=gdat(48836,a2); % gives input parameters as a structure, allows to call the same for many shots % a4=gdat('opt1',123,'opt2',[1 2 3],'shot',48832,'data_request','Ip','opt3','aAdB'); % all in pairs % a5=gdat(48836,'ip'); % standard call % a6=gdat(48836,'ip','Opt1',123,'Doplot',1,'opt2','Abc'); % standard call with a few options (note all lowercase in output) % a7 = gdat(48836,'static("r_m")[$1]'',''001'); % note first and last quote of tdi argument added by gdat % a7 = gdat(48836,'tcv_eq(''''psi'''',''''liuqe.m'''')'); % do not use double quote char so 'liuqe',11 will work % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Remote data access for TCV % You need to make a "tunnel" in one unix session from the remote node using for example: % ssh -L 5555:tcvdata.epfl.ch:8000 sauter@lac911.epfl.ch % to create a tunnel to port 5555 % % Then in another unix session on the remote node, in matlab and with the appropriate mds path do: % >> mdsconnect('localhost:5555') % >> mdsvalue('1+2') % should return 3 if correctly connected % % % Comments for local developer: % This gdat is just a "header routine" calling the gdat for the specific machine gdat_`machine`.m which can be called % directly, thus which should be able to treat the same type of input arguments % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Prepare some variables, etc varargout{1}=cell(1,1); error_status=1; % construct main default parameters structure gdat_params.data_request = ''; default_machine = 'tcv'; gdat_params.machine=default_machine; gdat_params.doplot = 0; gdat_params.liuqe = 1; gdat_params.nverbose = 1; % construct list of keywords from global set of keywords and specific TCV set % get data_request names from centralized table %%% data_request_names = get_data_request_names; % do not use xlsx anymore but scan respective machine_requests_mapping.m files data_request_names = get_data_request_names_from_gdat_xxx(default_machine); % add TCV specific to all: if ~isempty(data_request_names.tcv) tcv_names = fieldnames(data_request_names.tcv); for i=1:length(tcv_names) data_request_names.all.(tcv_names{i}) = data_request_names.tcv.(tcv_names{i}); end end data_request_names_all = sort(fieldnames(data_request_names.all)); % construct default output structure gdat_data.data = []; gdat_data.units = []; gdat_data.dim = []; gdat_data.dimunits = []; gdat_data.t = []; gdat_data.x = []; gdat_data.shot = []; gdat_data.gdat_request = []; gdat_data.gdat_params = gdat_params; gdat_data.data_fullpath = []; % Treat inputs: ivarargin_first_char = 3; data_request_eff = ''; if nargin>=2 && ischar(data_request); data_request_eff = data_request; data_request = data_request; % should not lower until see if keyword end gdat_data.gdat_request = data_request_names_all; % so if return early gives list of possible request names gdat_data.gdat_params.help = tcv_help_parameters(fieldnames(gdat_data.gdat_params)); gdat_params = gdat_data.gdat_params; % no inputs if nargin==0 % return defaults and list of keywords return end do_mdsopen_mdsclose = 1; % treat 1st arg if nargin>=1 if isempty(shot) % means mdsopen(shot) already performed shot_mds = mdsipmex(2,'$SHOT'); if isnumeric(shot_mds); shot = shot_mds; end gdat_data.shot = shot; do_mdsopen_mdsclose = 0; if ischar(shot) || isempty(shot) if gdat_params.nverbose>=1 if isstruct(data_request) && isfield(data_request,'data_request') warning(['shot cannot be opened with ' data_request.data_request]); elseif ischar(data_request) warning(['shot cannot be opened with ' data_request]); else warning(['shot cannot be opened']); end end if ~strcmp(data_request,'ids'); return; end % empty shot return empty ids so valid command end elseif isnumeric(shot) gdat_data.shot = shot; elseif ischar(shot) ivarargin_first_char = 1; else if gdat_params.nverbose>=1; warning('type of 1st argument unexpected, should be numeric or char'); end error_status=2; return end if nargin==1 % Only shot number given. If there is a default data_request set it and continue, otherwise return return end end % 2nd input argument if not part of pairs if nargin>=2 && ivarargin_first_char~=1 if isempty(data_request) return end % 2nd arg can be a structure with all options except shot_number, or a string for the pathname or keyword, or the start of pairs string/value for the parameters if isstruct(data_request) if ~isfield(data_request,'data_request') if gdat_params.nverbose>=1; warning('expects field data_request in input parameters structure'); end error_status=3; return end data_request_eff = data_request.data_request; data_request.data_request = lower(data_request.data_request); gdat_params = data_request; else % since data_request is char check from nb of args if it is data_request or a start of pairs if mod(nargin-1,2)==0 ivarargin_first_char = 2; else ivarargin_first_char = 3; data_request_eff = data_request; end end end if ~isstruct(data_request) gdat_params.data_request = data_request_eff; end % if start pairs from shot or data_request, shift varargin if ivarargin_first_char==1 varargin_eff{1} = shot; varargin_eff{2} = data_request; varargin_eff(3:nargin) = varargin(:); elseif ivarargin_first_char==2 varargin_eff{1} = data_request; varargin_eff(2:nargin-1) = varargin(:); else varargin_eff(1:nargin-2) = varargin(:); end % extract parameters from pairs of varargin: i_liuqe_set_in_pairs = 0; % to know if liuqe was not set explicitely thus use value in expression later if (nargin>=ivarargin_first_char) if mod(nargin-ivarargin_first_char+1,2)==0 for i=1:2:nargin-ivarargin_first_char+1 if ischar(varargin_eff{i}) if strcmp(varargin_eff{i},'liuqe') i_liuqe_set_in_pairs = 1; end % enforce lower case for any character driven input if ischar(varargin_eff{i+1}) && ~strcmp('path',varargin_eff{i}) gdat_params.(lower(varargin_eff{i})) = lower(varargin_eff{i+1}); else gdat_params.(lower(varargin_eff{i})) = varargin_eff{i+1}; end else if gdat_params.nverbose>=1; warning(['input argument nb: ' num2str(i) ' is incorrect, expects a character string']); end error_status=401; return end end else if gdat_params.nverbose>=1; warning('number of input arguments incorrect, cannot make pairs of parameters'); end error_status=402; return end end % if it is a request_keyword copy it: if ischar(data_request_eff) || length(data_request_eff)==1 ij=strmatch(lower(data_request_eff),data_request_names_all,'exact'); else ij=[]; end if ~isempty(ij); gdat_data.gdat_request = data_request_names_all{ij}; gdat_params.data_request = gdat_data.gdat_request; if isfield(data_request_names.all.(data_request_names_all{ij}),'description') && ~isempty(data_request_names.all.(data_request_names_all{ij}).description) % copy description of keyword gdat_data.request_description = data_request_names.all.(data_request_names_all{ij}).description; end end % special treatment if shot and data_request given within pairs if isfield(gdat_params,'shot') shot = gdat_params.shot; % should use only gdat_params.shot but change shot to make sure gdat_data.shot = gdat_params.shot; gdat_params=rmfield(gdat_params,'shot'); end if ~isfield(gdat_params,'data_request') || isempty(gdat_params.data_request) % warning('input for ''data_request'' missing from input arguments') % might be correct, asking for list of requests error_status=5; return end gdat_data.gdat_params = gdat_params; % This means that before here it is gdat_params which should be updated % re-assign main variables to make sure use the one in gdat_data structure shot = gdat_data.shot; data_request_eff = gdat_data.gdat_params.data_request; error_status = 6; % at least reached this level liuqe_version = 1; if isfield(gdat_data.gdat_params,'liuqe') && ~isempty(gdat_data.gdat_params.liuqe) liuqe_version = gdat_data.gdat_params.liuqe; else gdat_data.gdat_params.liuqe = liuqe_version; end liuqe_matlab = 1; % now default should be matlab liuqe nodes if liuqe_version<0 || (liuqe_version > 10 && liuqe_version < 20) liuqe_matlab = 0; end liuqe_version_eff = mod(liuqe_version,10); substr_liuqe = ''; substr_liuqe_tcv_eq = ''; if liuqe_version_eff==2 || liuqe_version_eff==3 || (liuqe_matlab==1 && liuqe_version_eff==1) substr_liuqe = ['_' num2str(liuqe_version_eff)]; end if liuqe_version_eff==2 || liuqe_version_eff==3 substr_liuqe_tcv_eq = num2str(liuqe_version_eff); end % special treatment for model shot=-1 or preparation shot >=100'000 begstr = ''; if ~isempty(shot) && (shot==-1 || (shot>=100000 && shot < 200000) || liuqe_version==-1 ) % requires FBTE liuqe_version_eff = -1; begstr = 'tcv_eq( "'; substr_liuqe = '", "FBTE" )'; end % should replace all above by just psitbx_str... liuqe_matlab = 1; switch liuqe_version case {-1}, liuqe_ext=''; psitbx_str='FBTE'; liuqe_matlab = 0; case {1,21}, liuqe_ext=''; psitbx_str='LIUQE.M'; case {11}, liuqe_ext=''; psitbx_str='LIUQE';liuqe_matlab = 0; case {2, 3, 22, 23}, liuqe_ext=['_' num2str(mod(liuqe_version,10))]; psitbx_str=['LIUQE.M' num2str(mod(liuqe_version,10))]; case {12,13}, liuqe_ext=['_' num2str(mod(liuqe_version,10))]; psitbx_str=['LIUQE' num2str(mod(liuqe_version,10))];liuqe_matlab = 0; otherwise, error(['Unknown LIUQE version, liuqe = ' num2str(liuqe_version)]); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Specifications on how to get the data provided in tcv_requests_mapping mapping_for_tcv = tcv_requests_mapping(data_request_eff,shot); gdat_data.label = mapping_for_tcv.label; ishot=NaN; if do_mdsopen_mdsclose % mdsdefaultserver tcv1.epfl.ch; % should be in tcv general path, but set-it in the meantime... %%% if liuqe_version_eff==-1 if shot==-1 || liuqe_version_eff==-1 ishot = mdsopen('pcs', shot); else if length(data_request_eff)>7 && strcmp(lower(data_request_eff(1:6)),'\rtc::') ishot = mdsopen('rtc',shot); % sub-tree data_request_eff = data_request_eff(7:end); mapping_for_tcv.expression = data_request_eff; else ishot = mdsopen(shot); % if ishot equal to shot, then mdsclose at the end end end if isempty(ishot) || ishot~=shot if gdat_params.nverbose>=1; warning(['cannot open shot= ' num2str(shot)]); end return end end % fill again at end to have full case, but here to have present status in case of early return gdat_data.gdat_params.help = tcv_help_parameters(fieldnames(gdat_data.gdat_params)); gdat_data.mapping_for.tcv = mapping_for_tcv; gdat_params = gdat_data.gdat_params; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % 1st treat the simplest method: "tdi" (and tdiliuqe) if strcmp(mapping_for_tcv.method(1:3),'tdi') % need to treat liuqe2, model, etc from options.... substr_tdi = ''; if liuqe_matlab==0 && strcmp(mapping_for_tcv.method,'tdiliuqe'); substr_tdi = substr_liuqe; end if iscell(mapping_for_tcv.expression) if length(mapping_for_tcv.expression)>0 % series of arguments for tdi given in each cell if liuqe_matlab==1 ij = findstr(mapping_for_tcv.expression{1},'equil_'); if ~isempty(ij) mapping_for_tcv.expression{1}(ij+5:ij+6) = substr_liuqe; end end eval_expr = ['tdi(''' mapping_for_tcv.expression{1} '''']; for i=2:length(mapping_for_tcv.expression) eval_expr = [eval_expr ',''' mapping_for_tcv.expression{i} '''']; end eval_expr = [eval_expr ');']; aatmp = eval(eval_expr); else % empty or wrong expression error_status=701; return end else do_liuqem2liuqef = 0; if liuqe_version_eff==-1 mapping_for_tcv_expression_eff = mapping_for_tcv.expression; if length(mapping_for_tcv.expression)>8 && strcmp(lower(mapping_for_tcv.expression(1:8)),'\results') mapping_for_tcv_expression_eff = mapping_for_tcv.expression(11:end); elseif findstr('tcv_eq',lower(mapping_for_tcv.expression)) ij = regexpi(mapping_for_tcv.expression,''''''); if length(ij)<2 disp(['expected more double quotes in mapping_for_tcv.expression = ' mapping_for_tcv.expression]); return else mapping_for_tcv_expression_eff = mapping_for_tcv.expression(ij(1)+2:ij(2)-1); end end eval_expr = ['tdi(''' begstr mapping_for_tcv_expression_eff substr_liuqe ''');'] else if liuqe_matlab==1 ij = findstr(mapping_for_tcv.expression,'equil_'); if ~isempty(ij) mapping_for_tcv.expression(ij+5:ij+6) = substr_liuqe; end ij = regexpi(mapping_for_tcv.expression,'LIUQE\.M.?','once'); if ~isempty(ij) ichar_after_liuqe = 7; if strcmp(mapping_for_tcv.expression(ij+ichar_after_liuqe),'2') || ... strcmp(mapping_for_tcv.expression(ij+ichar_after_liuqe),'3') if i_liuqe_set_in_pairs==0 gdat_params.liuqe = str2num(mapping_for_tcv.expression(ij+ichar_after_liuqe)); gdat_data.gdat_params = gdat_params; substr_liuqe_tcv_eq = mapping_for_tcv.expression(ij+ichar_after_liuqe); end ichar_after_liuqe = 8; end mapping_for_tcv.expression = [mapping_for_tcv.expression(1:ij+6) substr_liuqe_tcv_eq mapping_for_tcv.expression(ij+ichar_after_liuqe:end)]; else % check if liuqe, liuqe2 or liuqe3 is given in expression ij = regexpi(mapping_for_tcv.expression,'LIUQE[^\.]','once'); if ~isempty(ij) ichar_after_liuqe = 5; if strcmp(mapping_for_tcv.expression(ij+ichar_after_liuqe),'2') || ... strcmp(mapping_for_tcv.expression(ij+ichar_after_liuqe),'3') if i_liuqe_set_in_pairs==0 gdat_params.liuqe = 10+str2num(mapping_for_tcv.expression(ij+ichar_after_liuqe)); gdat_data.gdat_params = gdat_params; substr_liuqe_tcv_eq = mapping_for_tcv.expression(ij+ichar_after_liuqe); end ichar_after_liuqe = 6; else if i_liuqe_set_in_pairs==0 gdat_params.liuqe = 11; gdat_data.gdat_params = gdat_params; substr_liuqe_tcv_eq = ''; end end if i_liuqe_set_in_pairs==1 && liuqe_matlab==1 % enforce matlab liuqe version even matlab if asked for substr_liuqe_tcv_eq = ['.M' substr_liuqe_tcv_eq]; end mapping_for_tcv.expression = [mapping_for_tcv.expression(1:ij+4) substr_liuqe_tcv_eq mapping_for_tcv.expression(ij+ichar_after_liuqe:end)]; end end else ij = regexpi(mapping_for_tcv.expression,'LIUQE\.M.?','once'); if ~isempty(ij) mapping_for_tcv.expression = [mapping_for_tcv.expression(1:ij+4) substr_liuqe_tcv_eq mapping_for_tcv.expression(ij+7:end)]; do_liuqem2liuqef = 1; end end eval_expr = ['tdi(''' mapping_for_tcv.expression ''');']; end % special cases for matching liuqe fortran and matlab if liuqe_matlab == 0 && do_liuqem2liuqef==1 % assume tcv_eq(''keyword'',''LIUQE..'') liuqe_fortran_matlab = liuqefortran2liuqematlab; ij = regexpi(eval_expr,''''''); if numel(ij)>=2 liuqe_keyword = eval_expr(ij(1)+2:ij(2)-1); end ij_row=strmatch(liuqe_keyword,liuqe_fortran_matlab(:,2),'exact'); if ~isempty(ij_row) eval_expr = [eval_expr(1:ij(1)+1) liuqe_fortran_matlab{ij_row,1} eval_expr(ij(1)+2+length(liuqe_keyword):end)]; end end aatmp=eval(eval_expr); end if isempty(aatmp.data) || (isempty(aatmp.dim) && ischar(aatmp.data) && ~isempty(strfind(lower(aatmp.data),'no data')))% || ischar(aatmp.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' eval_expr ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp('check .gdat_request list'); end return end gdat_data.data = aatmp.data; gdat_data.dim = aatmp.dim; nbdims = length(gdat_data.dim); if mapping_for_tcv.timedim==-1; % try to find time dim from units idim_non1 = []; len_dim = []; for i=1:length(aatmp.dimunits) if strcmp(aatmp.dimunits{i},'s'); mapping_for_tcv.timedim = i; end if length(aatmp.dim{i})>1 idim_non1(end+1) = i; len_dim(end+1) = length(aatmp.dim{i}); end end if length(idim_non1)==1 % only one dim non 1, assume it is time mapping_for_tcv.timedim = idim_non1(1); else [aamax,iaamax]=max(len_dim); if aamax./min(len_dim)>100 mapping_for_tcv.timedim = idim_non1(iaamax); end end if mapping_for_tcv.timedim==-1 % assume last one except if of length 1 mapping_for_tcv.timedim = nbdims; if (nbdims>1 && size(gdat_data.data,nbdims)==1); mapping_for_tcv.timedim = nbdims-1; end end end dim_nontim = setdiff([1:nbdims],mapping_for_tcv.timedim); if ~isempty(dim_nontim) % since most cases have at most 2d, copy as array if data is 2D and as cell if 3D or more if length(dim_nontim)==1 gdat_data.x = gdat_data.dim{dim_nontim(1)}; else gdat_data.x = gdat_data.dim(dim_nontim); end end if length(gdat_data.dim)>=mapping_for_tcv.timedim && mapping_for_tcv.timedim>0; gdat_data.t = gdat_data.dim{mapping_for_tcv.timedim}; end gdat_data.units = aatmp.units; gdat_data.dimunits = aatmp.dimunits; if mapping_for_tcv.gdat_timedim>0 && mapping_for_tcv.gdat_timedim ~= mapping_for_tcv.timedim % shift timedim to gdat_timedim data(i,j,...itime,k,...) -> data(i,inewtime,j,...,k,...) % note that this means that gdat_data.x and gdat_data.t are same and correct, % only .data, .dim and .dimunits need to be changed iprev=[1:nbdims]; ij=find(dim_nontim>mapping_for_tcv.gdat_timedim-1); inew=[1:mapping_for_tcv.gdat_timedim-1 mapping_for_tcv.timedim dim_nontim(ij)]; data_sizes = size(aatmp.data); gdat_data.data = NaN*ones(data_sizes(inew)); abcol=ones(1,nbdims)*double(':'); abcomma=ones(1,nbdims)*double(','); dimstr_prev=['(' repmat(':,',1,mapping_for_tcv.timedim-1) 'it,' ... repmat(':,',1,nbdims-mapping_for_tcv.timedim-1) ':)']; dimstr_new=['(' repmat(':,',1,mapping_for_tcv.gdat_timedim-1) 'it,' ... repmat(':,',1,nbdims-mapping_for_tcv.gdat_timedim-1) ':)']; % eval gdat_data.data(;,:,...,it,...) = aatmp.data(:,:,:,it,...); for it=1:size(aatmp.data,mapping_for_tcv.timedim) shift_eval = ['gdat_data.data' dimstr_new ' = aatmp.data' dimstr_prev ';']; eval(shift_eval); end gdat_data.dim = aatmp.dim(inew); gdat_data.dimunits = aatmp.dimunits(inew); else mapping_for_tcv.gdat_timedim = mapping_for_tcv.timedim; end gdat_data.data_fullpath=[mapping_for_tcv.expression]; gdat_data.label=[mapping_for_tcv.expression]; gdat_data.help = aatmp.help; % end of method "tdi" %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% elseif strcmp(mapping_for_tcv.method,'expression') % 2nd: method="expression" % assume expression contains an expression to evaluate and which creates a local structure into variable gdat_tmp % we copy the structure, to make sure default nodes are defined and to avoid if return is an closed object like tdi % eval_expr = [mapping_for_tcv.expression ';']; eval([mapping_for_tcv.expression ';']); if isempty(gdat_tmp) || (~isstruct(gdat_tmp) & ~isobject(gdat_tmp)) if (gdat_params.nverbose>=1); warning(['expression does not create a gdat_tmp structure: ' mapping_for_tcv.expression]); end error_status=801; return end tmp_fieldnames = setdiff(fieldnames(gdat_tmp),{'gdat_request','label'}); % could/should also remove label in any case if sum(strcmp(tmp_fieldnames,'data'))==0 % note: cannot do isfield since gdat_tmp might be an object if (gdat_params.nverbose>=1); warning(['expression does not return a child name ''data'' for ' data_request_eff]); end end for i=1:length(tmp_fieldnames) gdat_data.(tmp_fieldnames{i}) = gdat_tmp.(tmp_fieldnames{i}); end % add .t and .x in case only dim is provided % do not allow shifting of timedim since should be treated in the relevant expression ijdim=find(strcmp(tmp_fieldnames,'dim')==1); if ~isempty(ijdim) nbdims = length(gdat_data.dim); if mapping_for_tcv.timedim==-1; mapping_for_tcv.timedim = nbdims; if (size(gdat_data.data,nbdims)==1 && nbdims>1); mapping_for_tcv.timedim = nbdims-1; end end dim_nontim = setdiff([1:nbdims],mapping_for_tcv.timedim); ijt=find(strcmp(tmp_fieldnames,'t')==1); if isempty(ijt) gdat_data.t = gdat_data.dim{mapping_for_tcv.timedim}; end ijx=find(strcmp(tmp_fieldnames,'x')==1); if isempty(ijx) if ~isempty(dim_nontim) % since most cases have at most 2d, copy as array if data is 2D and as cell if 3D or more if length(dim_nontim)==1 gdat_data.x = gdat_data.dim{dim_nontim(1)}; else gdat_data.x = gdat_data.dim(dim_nontim); end end end gdat_data.data_fullpath=mapping_for_tcv.expression; if isfield(gdat_tmp,'help') gdat_data.help = gdat_tmp.help; else gdat_data.help = []; end end % end of method "expression" %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% elseif strcmp(mapping_for_tcv.method,'switchcase') switch data_request_eff % not lower(...) since data_request_eff should be lower case already at this stage % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % First the request names valid for "all" machines: % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'a_minor','rgeom','r_geom','a_minor_rho','r_geom_rho','rgeom_rho'} if strcmp(data_request_eff,'r_geom'); data_request_eff = 'rgeom'; end if strcmp(data_request_eff,'r_geom_rho'); data_request_eff = 'rgeom_rho'; end % compute average minor or major radius (on z=zaxis normally) if liuqe_matlab==0 nodenameeff=['tcv_eq(''r_max_psi'',''LIUQE' substr_liuqe_tcv_eq ''')']; rmaxpsi=tdi(nodenameeff); ijnan = find(isnan(rmaxpsi.data)); if isempty(rmaxpsi.data) || isempty(rmaxpsi.dim) || ischar(rmaxpsi.data) || ... ( ~isempty(ijnan) && prod(size(ijnan))==prod(size(rmaxpsi.data)) ) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end nodenameeff2=['tcv_eq(''r_min_psi'',''LIUQE' substr_liuqe_tcv_eq ''')']; rminpsi=tdi(nodenameeff2); ijnan = find(isnan(rminpsi.data)); if isempty(rminpsi.data) || isempty(rminpsi.dim) || ... ( ~isempty(ijnan) && prod(size(ijnan))==prod(size(rminpsi.data)) ) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff2 ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end ij=find(rmaxpsi.data<0.5 | rmaxpsi.data>1.2); % points outside TCV vessel if ~isempty(ij); rmaxpsi.data(ij)=NaN; end ij=find(rminpsi.data<0.5 | rminpsi.data>1.2); if ~isempty(ij); rminpsi.data(ij)=NaN; end if strcmp(data_request_eff,'a_minor') gdat_data.data=0.5.*(rmaxpsi.data(end,:) - rminpsi.data(end,:)); gdat_data.data_fullpath=[nodenameeff ' - ' nodenameeff2 ' /2']; elseif strcmp(data_request_eff,'a_minor_rho') gdat_data.data=0.5.*(rmaxpsi.data(:,:) - rminpsi.data(:,:)); gdat_data.data_fullpath=[nodenameeff ' - ' nodenameeff2 ' /2']; elseif strcmp(data_request_eff,'rgeom') gdat_data.data=0.5.*(rmaxpsi.data(end,:) + rminpsi.data(end,:)); gdat_data.data_fullpath=[nodenameeff ' + ' nodenameeff2 ' /2']; elseif strcmp(data_request_eff,'rgeom_rho') gdat_data.data=0.5.*(rmaxpsi.data(:,:) + rminpsi.data(:,:)); gdat_data.data_fullpath=[nodenameeff ' + ' nodenameeff2 ' /2']; else if (gdat_params.nverbose>=1); warning(['should not be in this case with data_request_eff = ' data_request_eff]); end return end if strcmp(data_request_eff(end-3:end),'_rho') gdat_data.dim = rmaxpsi.dim; gdat_data.t = gdat_data.dim{mapping_for_tcv.timedim}; gdat_data.x = gdat_data.dim{1}; gdat_data.dimunits = rmaxpsi.dimunits(2); else gdat_data.dim = rmaxpsi.dim(2); gdat_data.t = gdat_data.dim{mapping_for_tcv.timedim}; gdat_data.dimunits = rmaxpsi.dimunits(2); end if any(strcmp(fieldnames(rmaxpsi),'units')) gdat_data.units = rmaxpsi.units; end else if isempty(substr_liuqe); substr_liuqe = '_1'; end if strcmp(data_request_eff,'a_minor') % to update when ready, still buggy, this should be rho,t nodenameeff=['tcv_eq(''a_minor_mid'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; elseif strcmp(data_request_eff,'a_minor_rho') nodenameeff=['tcv_eq(''r_out_mid'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; nodenameeff2=['tcv_eq(''r_in_mid'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; nodenameeff=['tcv_eq(''r_out'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; nodenameeff2=['tcv_eq(''r_in'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; elseif strcmp(data_request_eff,'rgeom') nodenameeff=['tcv_eq(''r_geom_mid'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; elseif strcmp(data_request_eff,'rgeom_rho') nodenameeff=['tcv_eq(''r_out_mid'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; nodenameeff2=['tcv_eq(''r_in_mid'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; nodenameeff=['tcv_eq(''r_out'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; nodenameeff2=['tcv_eq(''r_in'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; else if (gdat_params.nverbose>=1); warning(['should not be in this case with data_request_eff = ' data_request_eff]); end return end aatmp = tdi(nodenameeff); if strcmp(data_request_eff(end-3:end),'_rho') aatmp2 = tdi(nodenameeff2); if strcmp(data_request_eff,'a_minor_rho') gdat_data.data = 0.5.*(aatmp.data-aatmp2.data); elseif strcmp(data_request_eff,'rgeom_rho') gdat_data.data = 0.5.*(aatmp.data+aatmp2.data); end gdat_data.dim = aatmp.dim; % while there is a problem with \tcv_shot::top.results.equil... dim nodes gdat_data.x = gdat_data.dim{1}; gdat_data.data_fullpath=[nodenameeff ' and ' nodenameeff2]; else gdat_data.data = aatmp.data(end,:)'; gdat_data.dim = aatmp.dim(2); aatmp.dimunits = aatmp.dimunits(2); gdat_data.data_fullpath=[nodenameeff]; end gdat_data.t = gdat_data.dim{mapping_for_tcv.timedim}; gdat_data.units = aatmp.units(end); gdat_data.dimunits = aatmp.dimunits; end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'zgeom','z_geom'} % compute average minor or major radius (on z=zaxis normally) % data_request_eff = 'zgeom'; gdat_data.gdat_request = data_request_eff; gdat_data.gdat_params.gdat_request = gdat_data.gdat_request; gdat_params = gdat_data.gdat_params; if liuqe_matlab==0 nodenameeff=['tcv_eq(''z_contour'',''LIUQE' substr_liuqe_tcv_eq ''')']; else if isempty(substr_liuqe); substr_liuqe = '_1'; end nodenameeff=['tcv_eq(''z_edge'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; end zcontour=tdi(nodenameeff); if isempty(zcontour.data) || isempty(zcontour.dim) % || ischar(zcontour.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end if strcmp(data_request_eff,'zgeom') gdat_data.data=0.5.*(max(zcontour.data,[],1) + min(zcontour.data,[],1)); gdat_data.data_fullpath=['(max+min)/2 of ' nodenameeff]; gdat_data.dim{1} = zcontour.dim{2}; gdat_data.dimunits{1} = zcontour.dimunits{2}; else if (gdat_params.nverbose>=1); warning(['should not be in this case with data_request_eff = ' data_request_eff]); end return end gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; if any(strcmp(fieldnames(zcontour),'units')) gdat_data.units = zcontour.units; end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'b0'} % B0 at R0=0.88 r0exp=0.88; if isfield(gdat_data.gdat_params,'source') && ~isempty(gdat_data.gdat_params.source) ... && length(gdat_data.gdat_params.source)>=5 && strcmp(lower(gdat_data.gdat_params.source(1:5)),'liuqe') % expect liuqe or liuqe.m to have liuqe time-base, otherwise give full time base else gdat_data.gdat_params.source = 'iphi'; end if liuqe_version_eff==-1 nodenameeff = 'tcv_eq("BZERO","FBTE")'; tracetdi=tdi(nodenameeff); gdat_data.data = tracetdi.data; else if strcmp(lower(gdat_data.gdat_params.source),'iphi') nodenameeff=['\magnetics::iphi']; tracetdi=tdi(nodenameeff); gdat_data.data=192.E-07 * 0.996 *tracetdi.data/r0exp; else if liuqe_matlab==0 nodenameeff = ['tcv_eq(''BZERO'',''LIUQE' substr_liuqe_tcv_eq ''')']; else if isempty(substr_liuqe); substr_liuqe = '_1'; end nodenameeff=['tcv_eq(''BZERO'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; end tracetdi=tdi(nodenameeff); gdat_data.data = tracetdi.data; end end if isempty(tracetdi.data) || isempty(tracetdi.dim) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end return end gdat_data.data_fullpath=[nodenameeff]; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{1}; if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.units = tracetdi.units; end gdat_data.dimunits = tracetdi.dimunits; gdat_data.request_description = ['vacuum magnetic field at R0=' num2str(r0exp) 'm; COCOS=17']; gdat_data.r0 = r0exp; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'betan'} % 100*beta / |Ip[MA] * B0[T]| * a[m] % get B0 from gdat_tcv, without re-opening the shot and using the same parameters except data_request % easily done thanks to structure call for options params_eff = gdat_data.gdat_params; params_eff.data_request='b0'; b0=gdat_tcv([],params_eff); % note: no need to set .doplot=0 since gdat_tcv does not call gdat_plot in any case params_eff.data_request='ip'; ip=gdat_tcv([],params_eff); params_eff.data_request='beta'; beta=gdat_tcv([],params_eff); params_eff.data_request='a_minor'; a_minor=gdat_tcv([],params_eff); % use beta as time base if isempty(b0.data) || isempty(b0.dim) || isempty(ip.data) || isempty(ip.dim) || isempty(a_minor.data) || isempty(a_minor.dim) || isempty(beta.data) || isempty(beta.dim) if (gdat_params.nverbose>=1); warning(['problems loading data for data_request= ' data_request_eff]); end return end gdat_data.dim = beta.dim; gdat_data.t = beta.dim{1}; gdat_data.data = beta.data; ij=find(isfinite(ip.data)); ip_t = interp1(ip.dim{1}(ij),ip.data(ij),gdat_data.t); ij=find(isfinite(b0.data)); b0_t = interp1(b0.dim{1}(ij),b0.data(ij),gdat_data.t); ij=find(isfinite(a_minor.data)); a_minor_t = interp1(a_minor.dim{1}(ij),a_minor.data(ij),gdat_data.t); gdat_data.data = 100.*beta.data ./ abs(ip_t).*1.e6 .* abs(b0_t) .* a_minor_t; gdat_data.data_fullpath='100*beta/ip*1e6*b0*a_minor, each from gdat_tcv'; gdat_data.units = ''; gdat_data.dimunits{1} = 's'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'cxrs','cxrs_rho'} %not yet finished, just started % load typical data from cxrs, Ti, ni, vtori and vpoli (if available), as well as zeff from cxrs % if 'fit' option is added: 'fit',1, then the fitted profiles are returned % % sub_nodes names from CXRS_get_profiles function, lower case when used in gdat sub_nodes = {'Ti','vTor','vPol','nC','Zeff'}; % first node is also copied into data, choose "default' one sub_nodes_out = lower({'Ti','vTor','vPol','ni','Zeff'}); % sub_nodes_units = {'eV','m/s','m/s','m^{-3}',''}; % first node is also copied into data, choose "default' one % use A. Karpushov routine to get profiles and then copy the data or the fitted profiles aa=CXRS_get_profiles; cxrs_params = aa.param; gdat_data.cxrs_params.defaults = cxrs_params; cxrs_params.k_plot=0; cxrs_params.k_debug=0; % add params from gdat call params_eff = gdat_data.gdat_params; if isfield(params_eff,'cxrs_plot') && params_eff.cxrs_plot>0 cxrs_plot = params_eff.cxrs_plot; else cxrs_plot = 0; end gdat_data.gdat_params.cxrs_plot = cxrs_plot; if isfield(params_eff,'source') && ~isempty(params_eff.source) source = params_eff.source; else source = [1 2 3]; end gdat_data.gdat_params.source = source; if isfield(params_eff,'time_interval') && ~isempty(params_eff.time_interval) && length(params_eff.time_interval)>=2 time_interval = params_eff.time_interval; cxrs_plot=1; else time_interval = []; end gdat_data.gdat_params.time_interval = time_interval; gdat_data.gdat_params.cxrs_plot = cxrs_plot; fit_tension_default = -100.; if isfield(params_eff,'fit_tension') fit_tension = params_eff.fit_tension; else fit_tension = fit_tension_default; end if ~isstruct(fit_tension) fit_tension_eff.ti = fit_tension; fit_tension_eff.vi = fit_tension; fit_tension_eff.ni = fit_tension; fit_tension_eff.zeff = fit_tension; fit_tension = fit_tension_eff; else if ~isfield(fit_tension,'ti'); fit_tension.ti = fit_tension_default; end if ~isfield(fit_tension,'vi'); fit_tension.vi = fit_tension_default; end if ~isfield(fit_tension,'ni') && ~isfield(fit_tension,'nc'); fit_tension.ni = fit_tension_default; end if ~isfield(fit_tension,'zeff'); fit_tension.zeff = fit_tension_default; end end gdat_data.gdat_params.fit_tension = fit_tension; cxrs_params.prof.Ti.taus = fit_tension.ti; cxrs_params.prof.vi.taus = fit_tension.vi; cxrs_params.prof.nc.taus = fit_tension.ni; cxrs_params.prof.zeff.taus = fit_tension.zeff; cxrs_params.k_plot = cxrs_plot; cxrs_profiles = CXRS_get_profiles(shot,source,time_interval,cxrs_params); inb_times = length(cxrs_profiles.Times); gdat_data.cxrs_params = cxrs_profiles.param; if isempty(cxrs_profiles.Times) || ~isfield(cxrs_profiles,'proffit') if (gdat_params.nverbose>=1); warning(['problems loading data with CXRS_get_profiles for data_request= ' data_request_eff]); end for i=1:length(sub_nodes) sub_eff_out = sub_nodes_out{i}; gdat_data.(sub_eff_out).fit.data = []; gdat_data.(sub_eff_out).fit.rho = []; gdat_data.(sub_eff_out).fit.error_bar = []; gdat_data.(sub_eff_out).raw.data = []; gdat_data.(sub_eff_out).raw.rho = []; gdat_data.(sub_eff_out).raw.error_bar = []; gdat_data.(sub_eff_out).raw.error_bar_rho = []; gdat_data.(sub_eff_out).raw.cxrs_system = []; gdat_data.time_interval = []; gdat_data.(sub_eff_out).units = sub_nodes_units{i}; if i==1 gdat_data.data = gdat_data.(sub_eff_out).fit.data; gdat_data.x = gdat_data.(sub_eff_out).fit.rho; gdat_data.error_bar = gdat_data.(sub_eff_out).fit.error_bar; gdat_data.units = gdat_data.(sub_eff_out).units; end end return end inb_channels =120; % need to change if gets bigger!!! but easier to prefill with NaNs and use the "use" part for i=1:length(sub_nodes) sub_eff = sub_nodes{i}; sub_eff_out = sub_nodes_out{i}; % fits if isfield(cxrs_profiles.proffit,sub_eff) gdat_data.(sub_eff_out).fit.data = cxrs_profiles.proffit.(sub_eff); gdat_data.(sub_eff_out).fit.rho = cxrs_profiles.proffit.([sub_eff '_rho']); gdat_data.(sub_eff_out).fit.error_bar = cxrs_profiles.proffit.(['d' sub_eff]); else gdat_data.(sub_eff_out).fit.data = []; gdat_data.(sub_eff_out).fit.rho = []; gdat_data.(sub_eff_out).fit.error_bar = []; end % raw data (use all data so keep same size) gdat_data.(sub_eff_out).raw.data = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.rho = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.error_bar = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.error_bar_rho = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.cxrs_system = NaN * ones(inb_channels,inb_times); gdat_data.time_interval = []; for it=1:inb_times if isfield(cxrs_profiles,sub_eff) nb_raw_points = length(cxrs_profiles.(sub_eff){it}.use.y); gdat_data.(sub_eff_out).raw.data(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.y; gdat_data.(sub_eff_out).raw.rho(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.x; gdat_data.(sub_eff_out).raw.error_bar(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.dy; gdat_data.(sub_eff_out).raw.error_bar_rho(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.dx; gdat_data.(sub_eff_out).raw.cxrs_system(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.sys; gdat_data.time_interval{it} = cxrs_profiles.(sub_eff){it}.t_lim; end end gdat_data.(sub_eff_out).units = sub_nodes_units{i}; if i==1 gdat_data.data = gdat_data.(sub_eff_out).fit.data; gdat_data.x = gdat_data.(sub_eff_out).fit.rho; gdat_data.error_bar = gdat_data.(sub_eff_out).fit.error_bar; gdat_data.units = gdat_data.(sub_eff_out).units; end end gdat_data.t = cxrs_profiles.proffit.time; gdat_data.dim = {gdat_data.x; gdat_data.t}; if isempty(time_interval) gdat_data.data_fullpath=['CXRS_get_profiles(' num2str(shot) ',[' num2str(source) '],[],cxrs_params); % with cxrs_params']; else gdat_data.data_fullpath=['CXRS_get_profiles(' num2str(shot) ',[' num2str(source) '],[' num2str(time_interval) '],cxrs_params); % with cxrs_params']; end gdat_data.dimunits{1} = ''; gdat_data.dimunits{2} = 's'; % add grids_1d to have rhotor, etc if cxrs_rho was asked for if strcmp(data_request_eff,'cxrs_rho') gdat_data = get_grids_1d(gdat_data,2,1,gdat_params.nverbose); else gdat_data = get_grids_1d(gdat_data,2,0,gdat_params.nverbose); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'eqdsk'} % time=1.; % default time if isfield(gdat_data.gdat_params,'time') && ~isempty(gdat_data.gdat_params.time) time = gdat_data.gdat_params.time; else gdat_data.gdat_params.time = time; if (gdat_params.nverbose>=3); disp(['"time" is expected as an option, choose default time = ' num2str(time)]); end end default_write_eqdsk = 1; if isfield(gdat_data.gdat_params,'write') && ~isempty(gdat_data.gdat_params.write) if ischar(gdat_data.gdat_params.write) if strcmp(lower(gdat_data.gdat_params.write),'no') gdat_data.gdat_params.write = 0; elseif strcmp(lower(gdat_data.gdat_params.write),'yes') gdat_data.gdat_params.write = 1; else if (gdat_params.nverbose>=3); disp(['expects 0 or 1, event yes or no for write option, not: ' ... gdat_data.gdat_params.write ', use default 1']); end gdat_data.gdat_params.write = []; end end if gdat_data.gdat_params.write~=1 && gdat_data.gdat_params.write~=0 gdat_data.gdat_params.write = default_write_eqdsk; end else gdat_data.gdat_params.write = default_write_eqdsk; end default_map_eqdsk_psirz = 0; if isfield(gdat_data.gdat_params,'map_eqdsk_psirz') && ~isempty(gdat_data.gdat_params.map_eqdsk_psirz) if ~isnumeric(gdat_data.gdat_params.map_eqdsk_psirz) || (gdat_data.gdat_params.map_eqdsk_psirz~=1 && gdat_data.gdat_params.map_eqdsk_psirz~=0) gdat_data.gdat_params.map_eqdsk_psirz = default_map_eqdsk_psirz_eqdsk; end else gdat_data.gdat_params.map_eqdsk_psirz = default_map_eqdsk_psirz; end gdat_data.gdat_params.time = time; gdat_data.t = time; zshift = 0.; if isfield(gdat_data.gdat_params,'zshift') && ~isempty(gdat_data.gdat_params.zshift) zshift = gdat_data.gdat_params.zshift; else gdat_data.gdat_params.zshift = zshift; end gdat_data.gdat_params.zshift = zshift; nrz_out = [129,129]; if isfield(gdat_data.gdat_params,'nrz_out') && ~isempty(gdat_data.gdat_params.nrz_out) nrz_out = gdat_data.gdat_params.nrz_out; else gdat_data.gdat_params.nrz_out = nrz_out; end gdat_data.gdat_params.nrz_out = nrz_out; sources_available = {'liuqe','chease'}; if isfield(gdat_data.gdat_params,'source') && ~isempty(gdat_data.gdat_params.source) && ~isempty(intersect(sources_available,lower(gdat_data.gdat_params.source))) source = gdat_data.gdat_params.source; else gdat_data.gdat_params.source = 'liuqe'; end for itime=1:length(time) time_eff = time(itime); % use read_results updated to effectively obtain an eqdsk with sign correct with COCOS=2 [fnames_readresults]=read_results_for_chease(shot,time_eff,liuqe_version,3,[],[],[],zshift,0,1,nrz_out); cocos_read_results_for_chease = 17; if isempty(fnames_readresults) if gdat_params.nverbose>=1; warning(['could not create eqdsk file from read_results_for_chease with data_request= ' data_request_eff]); end return end ii = regexpi(fnames_readresults{4},'eqdsksigns'); if ~isempty(ii) eqdskval=read_eqdsk(fnames_readresults{4},cocos_read_results_for_chease,0,[],[],1); % read_results now has relevant cocos LIUQE= 17 else disp('wrong name check order of eqdsk outputs') return end for i=1:length(fnames_readresults) unix(['rm ' fnames_readresults{i}]); end % % run CHEASE if asked % cocos_in = 2; if strcmp(lower(gdat_data.gdat_params.source),'chease') % will give cocos_out (becoming cocos_in)=2 by default [fname_out,globalsvalues,namelist_struct,namelistfile_eff] = run_chease(2,eqdskval,cocos_read_results_for_chease); ij = strfind(fname_out,'EQDSK_COCOS_02.OUT'); i = []; for i=1:length(ij) if ~isempty(ij(i)); break;end end eqdsk_cocos_in = read_eqdsk(fname_out{i},2,0); else % % transform to cocos=2 since read_results originally assumed it was cocos=2 [eqdsk_cocos_in, eqdsk_cocosout_IpB0pos,cocos_inout]=eqdsk_cocos_transform(eqdskval,[cocos_read_results_for_chease cocos_in]); end % fnamefull = fullfile(['/tmp/' getenv('USER')],['EQDSK_' num2str(shot) 't' num2str(time_eff,'%.4f')]); % We still write COCOS=2 case, since closer to standard (in /tmp) if gdat_data.gdat_params.write==1 write_eqdsk(fnamefull,eqdsk_cocos_in,cocos_in,[],[],[],1); end % Now gdat_tcv should return the convention from LIUQE which is COCOS=17, except if specified in option % create standard filename name from shot, time_eff (cocos will be added by write_eqdsk) cocos_out = 17; if isfield(gdat_data.gdat_params,'cocos') && ~isempty(gdat_data.gdat_params.cocos) cocos_out = gdat_data.gdat_params.cocos; else gdat_data.gdat_params.cocos = cocos_out; end [eqdsk_cocosout, eqdsk_cocosout_IpB0pos,cocos_inout]=eqdsk_cocos_transform(eqdsk_cocos_in,[cocos_in cocos_out]); % for several times, use array of structure for eqdsks, % cannot use it for psi(R,Z) in .data and .x since R, Z might be different at different times, % so project psi(R,Z) on Rmesh, Zmesh of 1st time if length(time) > 1 if gdat_data.gdat_params.write==1 gdat_data.eqdsk(itime) = write_eqdsk(fnamefull,eqdsk_cocosout,cocos_out); else gdat_data.eqdsk(itime) = eqdsk_cocosout; end if gdat_data.gdat_params.map_eqdsk_psirz==1 if itime==1 gdat_data.data(:,:,itime) = gdat_data.eqdsk(itime).psi; gdat_data.dim{1} = gdat_data.eqdsk(itime).rmesh; gdat_data.dim{2} = gdat_data.eqdsk(itime).zmesh; else xx=repmat(reshape(gdat_data.dim{1},length(gdat_data.dim{1}),1),1,size(gdat_data.eqdsk(itime).psi,2)); yy=repmat(reshape(gdat_data.dim{2},1,length(gdat_data.dim{2})),size(gdat_data.eqdsk(itime).psi,1),1); aa = interpos2Dcartesian(gdat_data.eqdsk(itime).rmesh,gdat_data.eqdsk(itime).zmesh ... ,gdat_data.eqdsk(itime).psi,xx,yy,-1,-1); gdat_data.data(:,:,itime) = aa; end else % do not map all psi(r,z) onto same mesh and leave .data, .dim empty (much faster) end else if gdat_data.gdat_params.write==1 gdat_data.eqdsk = write_eqdsk(fnamefull,eqdsk_cocosout,cocos_out); else gdat_data.eqdsk = eqdsk_cocosout; end gdat_data.data = gdat_data.eqdsk.psi; gdat_data.dim{1} = gdat_data.eqdsk.rmesh; gdat_data.dim{2} = gdat_data.eqdsk.zmesh; end end gdat_data.dim{3} = gdat_data.t; gdat_data.x = gdat_data.dim(1:2); if gdat_data.gdat_params.map_eqdsk_psirz==1 gdat_data.data_fullpath=['psi(R,Z,t) on same R,Zmesh in .data and eqdsk(itime) from read_eqdsk from LIUQE' num2str(liuqe_version) ';zshift=' num2str(zshift)]; else gdat_data.data_fullpath=['eqdsk(itime) from read_eqdsk from LIUQE' num2str(liuqe_version) ';zshift=' num2str(zshift)]; end gdat_data.units = 'T m^2'; gdat_data.dimunits = {'m','m','s'}; gdat_data.request_description = ['data=psi, x=(R,Z), eqdsk contains eqdsk structure with which ' ... 'plot_eqdsk, write_eqdsk, read_eqdsk can be used']; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'halpha'} channels = -1; if isfield(gdat_data.gdat_params,'channels') && ~isempty(gdat_data.gdat_params.channels) channels = gdat_data.gdat_params.channels; end % '\base::pd:pd_001'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'ids'} ids_empty_path = fullfile(fileparts(mfilename('fullpath')),'..','TCV_IMAS','ids_empty'); params_eff = gdat_data.gdat_params; if isfield(params_eff,'source') && ~isempty(params_eff.source) ids_top_name = params_eff.source; else ids_top_name = []; warning('gdat:EmptyIDSName','Need an ids name in ''source'' parameter\n check substructure gdat_params.sources_available for an ids list'); addpath(ids_empty_path); assert(~~exist('ids_list','file'),'could not find ids_list.m in %s',ids_empty_path); gdat_data.gdat_params.sources_available = ids_list; rmpath(ids_empty_path); return end ids_gen_ok = ~~exist('ids_gen','file'); if ids_gen_ok ids_empty = ids_gen(ids_top_name); % generate ids from gateway function ids_gen else % load empty ids structure from template file fname = sprintf('ids_empty_%s',ids_top_name); try assert(~~exist(ids_empty_path,'dir'),'folder %s not found',ids_empty_path); addpath(ids_empty_path); assert(~~exist(fname,'file'),'file %s does not exist in %s',fname,ids_empty_path); ids_empty = eval(fname); rmpath(ids_empty_path); catch ME fprintf('Could not load empty template for %s\n',ids_top_name); fprintf('Available templates:\n'); disp(dir(ids_empty_path)); rmpath(ids_empty_path); rethrow(ME); end end if ~isfield(gdat_data.gdat_params,'error_bar') || isempty(gdat_data.gdat_params.error_bar) gdat_data.gdat_params.error_bar = 'delta'; end try if ~isempty(shot) [ids_top,ids_top_description] = feval(['tcv_get_ids_' ids_top_name],shot,ids_empty,gdat_data.gdat_params); gdat_data.(ids_top_name) = ids_top; gdat_data.([ids_top_name '_description']) = ids_top_description; else gdat_data.(ids_top_name) = ids_empty; gdat_data.([ids_top_name '_description']) = ['shot empty so return default empty structure for ' ids_top_name]; end catch ME_tcv_get_ids disp(['there is a problem with: tcv_get_ids_' ids_top_name ... ' , may be check if it exists in your path or test it by itself']) gdat_data.(ids_top_name) = ids_empty; gdat_data.([ids_top_name '_description']) = getReport(ME_tcv_get_ids); rethrow(ME_tcv_get_ids) end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'ec_data', 'aux', 'h_cd', 'nbi_data', 'ic_data', 'lh_data','ohm_data', 'bs_data'} % note: same time array for all at main.data level, then individual at .ec, .nbi levels % At this stage fill just eccd, later add nbi sources_avail = {'ec','nbi','ohm','bs'}; % can be set in parameter source % create empty structures for all, so in return one always have same substructres for i=1:length(sources_avail) gdat_data.(sources_avail{i}).data = []; gdat_data.(sources_avail{i}).units = []; gdat_data.(sources_avail{i}).dim=[]; gdat_data.(sources_avail{i}).dimunits=[]; gdat_data.(sources_avail{i}).t=[]; gdat_data.(sources_avail{i}).x=[]; gdat_data.(sources_avail{i}).data_fullpath=[]; gdat_data.(sources_avail{i}).label=[]; end if ~isfield(gdat_data.gdat_params,'trialindx') || gdat_data.gdat_params.trialindx < 0 gdat_data.gdat_params.trialindx = []; end if ~isfield(gdat_data.gdat_params,'source') || isempty(gdat_data.gdat_params.source) switch data_request_eff case 'ec_data' gdat_data.gdat_params.source = {'ec'}; case 'ohm_data' gdat_data.gdat_params.source = {'ohm'}; case 'bs_data' gdat_data.gdat_params.source = {'bs'}; otherwise gdat_data.gdat_params.source = sources_avail; end elseif ~iscell(gdat_data.gdat_params.source) if ischar(gdat_data.gdat_params.source) gdat_data.gdat_params.source = lower(gdat_data.gdat_params.source); if ~any(strmatch(gdat_data.gdat_params.source,lower(sources_avail))) if (gdat_params.nverbose>=1) warning(['source= ' gdat_data.gdat_params.source ' is not part of the available sources: ' sprintf('''%s'' ',sources_avail{:})]); end return else gdat_data.gdat_params.source = {gdat_data.gdat_params.source}; end else if (gdat_params.nverbose>=1); warning([' source parameter not compatible with: ' sprintf('''%s'' ',sources_avail{:})]); end return end else for i=1:length(gdat_data.gdat_params.source) gdat_data.gdat_params.source{i} = lower(gdat_data.gdat_params.source{i}); if ~any(strmatch(gdat_data.gdat_params.source{i},lower(sources_avail))) if gdat_data.gdat_params.nverbose>=1 warning(['source = ' gdat_data.gdat_params.source{i} ' not expected with data_request= ' data_request_eff]) end end end end % create structure for icd sources from params and complete with defaults source_icd.ec = 'toray'; source_icd.nbi = ''; source_icd.ohm = 'ibs'; source_icd.bs = 'ibs'; for i=1:length(gdat_data.gdat_params.source) if ~isfield(gdat_data.gdat_params,['source_' gdat_data.gdat_params.source{i}]) gdat_data.gdat_params.(['source_' gdat_data.gdat_params.source{i}]) = source_icd.(gdat_data.gdat_params.source{i}); else source_icd.(gdat_data.gdat_params.source{i}) = gdat_data.gdat_params.(['source_' gdat_data.gdat_params.source{i}]); end end mdsopen(shot); field_for_main_data = 'cd_tot'; % add each source in main.data, on ohm time array gdat_data.units = 'A'; gdat_data.label=[]; % label was defined in tcv_mapping_request as char so replace to allow cells % if any(strmatch('ec',gdat_data.gdat_params.source)) data_fullpath = ''; ec_help = ''; % EC if strcmp(lower(source_icd.ec),'toray') if isempty(gdat_data.gdat_params.trialindx) [pabs_gyro,icdtot,pow_dens,currentdrive_dens,rho_dep_pow,drho_pow,pmax,icdmax,currentdrive_dens_w2,rho_dep_icd,drho_icd] = astra_tcv_EC_exp(shot); % centralized function for toray nodes else [pabs_gyro,icdtot,pow_dens,currentdrive_dens,rho_dep_pow,drho_pow,pmax,icdmax,currentdrive_dens_w2,rho_dep_icd,drho_icd] = astra_tcv_EC_exp(shot,[],[],[],[],[],gdat_data.gdat_params.trialindx); % centralized function for toray nodes end ec_help = 'from toray icdint with extracting of effective Icd for given launcher depending on nb rays used'; % All EC related quantities, each substructure should have at least fields data,x,t,units,dim,dimunits,label to be copied onto gdat_data launchers_label = {'1','2','3','4','5','6','7','8','9','tot'}; launchers_grid = [1:10]'; % power deposition related: ec_data.p_abs_plasma.data = pabs_gyro.data * 1e6; ec_data.p_abs_plasma.data(end+1,:) = sum(ec_data.p_abs_plasma.data,1,'omitnan'); ec_data.p_abs_plasma.label = [strrep(pabs_gyro.comment,'MW','W') ' ; last index is total']; ec_data.p_abs_plasma.units = 'W'; ec_data.p_abs_plasma.x = launchers_grid; ec_data.p_abs_plasma.t =pabs_gyro.tgrid; ec_data.p_abs_plasma.dim = {ec_data.p_abs_plasma.x, ec_data.p_abs_plasma.t}; ec_data.p_abs_plasma.dimunits = {launchers_label, 's'}; % ec_data.p_dens.data = pow_dens.data * 1e6; ec_data.p_dens.data(:,end+1,:) = sum(ec_data.p_dens.data,2,'omitnan'); ec_data.p_dens.label = [strrep(pow_dens.comment,'MW','W') ' ; last index is total']; ec_data.p_dens.units = 'W/m^3'; ec_data.p_dens.x = pow_dens.rgrid'; ec_data.p_dens.rhotor_norm = ec_data.p_dens.x; ec_data.p_dens.t = pow_dens.tgrid; ec_data.p_dens.dim = {ec_data.p_dens.x, launchers_grid, ec_data.p_dens.t}; ec_data.p_dens.dimunits = {'rhotor_norm', launchers_label, 's'}; % ec_data.max_pow_dens.data = pmax.data * 1e6; ec_data.max_pow_dens.label = strrep(pmax.comment,'MW','W'); ec_data.max_pow_dens.units = 'W/m^3'; ec_data.max_pow_dens.x = []; ec_data.max_pow_dens.t = pmax.tgrid; ec_data.max_pow_dens.dim = {ec_data.max_pow_dens.t}; ec_data.max_pow_dens.dimunits = {'s'}; % ec_data.rho_max_pow_dens.data = rho_dep_pow.data * 1e6; ec_data.rho_max_pow_dens.label = strrep(rho_dep_pow.comment,'MW','W'); ec_data.rho_max_pow_dens.units = 'rhotor_norm'; ec_data.rho_max_pow_dens.x = []; ec_data.rho_max_pow_dens.t = rho_dep_pow.tgrid; ec_data.rho_max_pow_dens.dim = {ec_data.rho_max_pow_dens.t}; ec_data.rho_max_pow_dens.dimunits = {'s'}; % ec_data.width_pow_dens.data = drho_pow.data; ec_data.width_pow_dens.label = drho_pow.comment; ec_data.width_pow_dens.units = 'rhotor_norm'; ec_data.width_pow_dens.x = []; ec_data.width_pow_dens.t = drho_pow.tgrid; ec_data.width_pow_dens.dim = {ec_data.width_pow_dens.t}; ec_data.width_pow_dens.dimunits = {'s'}; % current drive deposition related: ec_data.cd_tot.data = icdtot.data * 1e6; ec_data.cd_tot.data(end+1,:) = sum(ec_data.cd_tot.data,1,'omitnan'); ec_data.cd_tot.label = [strrep(icdtot.comment,'MA','A') ' ; last index is total']; ec_data.cd_tot.units = 'A'; ec_data.cd_tot.x = launchers_grid; ec_data.cd_tot.t = icdtot.tgrid; ec_data.cd_tot.dim = {ec_data.cd_tot.x, ec_data.cd_tot.t}; ec_data.cd_tot.dimunits = {launchers_label, 's'}; % ec_data.cd_dens.data = currentdrive_dens.data * 1e6; ec_data.cd_dens.data(:,end+1,:) = sum(ec_data.cd_dens.data,2,'omitnan'); ec_data.cd_dens.label = [strrep(currentdrive_dens.comment,'MA','A') ' ; last index is total']; ec_data.cd_dens.units = 'A/m^2'; ec_data.cd_dens.x = currentdrive_dens.rgrid'; ec_data.cd_dens.rhotor_norm = ec_data.cd_dens.x; ec_data.cd_dens.t = currentdrive_dens.tgrid; ec_data.cd_dens.dim = {ec_data.cd_dens.x, launchers_grid, ec_data.cd_dens.t}; ec_data.cd_dens.dimunits = {'rhotor_norm', launchers_label, 's'}; % ec_data.max_cd_dens.data = icdmax.data * 1e6; ec_data.max_cd_dens.label = strrep(icdmax.comment,'MA','A'); ec_data.max_cd_dens.units = 'A/m^2'; ec_data.max_cd_dens.x = []; ec_data.max_cd_dens.t = icdmax.tgrid; ec_data.max_cd_dens.dim = {ec_data.max_cd_dens.t}; ec_data.max_cd_dens.dimunits = {'s'}; % ec_data.rho_max_cd_dens.data = rho_dep_icd.data; ec_data.rho_max_cd_dens.label = rho_dep_icd.comment; ec_data.rho_max_cd_dens.units = 'rhotor_norm'; ec_data.rho_max_cd_dens.x = []; ec_data.rho_max_cd_dens.t = rho_dep_icd.tgrid; ec_data.rho_max_cd_dens.dim = {ec_data.rho_max_cd_dens.t}; ec_data.rho_max_cd_dens.dimunits = {'s'}; % ec_data.width_cd_dens.data = drho_icd.data; ec_data.width_cd_dens.label = drho_icd.comment; ec_data.width_cd_dens.units = 'rhotor_norm'; ec_data.width_cd_dens.x = []; ec_data.width_cd_dens.t = drho_icd.tgrid; ec_data.width_cd_dens.dim = {ec_data.width_cd_dens.t}; ec_data.width_cd_dens.dimunits = {'s'}; % ec_data.cd_dens_doublewidth.data = currentdrive_dens_w2.data * 1e6; ec_data.cd_dens_doublewidth.label = [strrep(currentdrive_dens_w2.comment,'MA','A') ' ; last index is total']; for subfields={'x','rhotor_norm','t','dim','dimunits','units'} ec_data.cd_dens_doublewidth.(subfields{1}) = ec_data.cd_dens.(subfields{1}); end else disp(['source_icd.ec = ' source_icd.ec ' not yet implemented, ask O. Sauter']) ec_data.p_abs_plasma = []; ec_data.p_abs_plasma(end+1,:) = []; ec_data.p_abs_plasma_label = []; ec_data.p_dens = []; ec_data.p_dens(end+1,:) = []; ec_data.p_dens_label = []; ec_data.max_pow_dens = []; ec_data.max_pow_dens_label = []; ec_data.rho_max_pow_dens = []; ec_data.rho_max_pow_dens_label = []; ec_data.width_pow_dens = []; ec_data.width_pow_dens_label = []; % current drive deposition related: ec_data.cd_tot = []; ec_data.cd_tot(end+1,:) = []; ec_data.cd_tot_label = []; ec_data.cd_dens = []; ec_data.cd_dens(:,end+1,:) = []; ec_data.cd_dens_label = []; ec_data.max_cd_dens = []; ec_data.max_cd_dens_label = []; ec_data.rho_max_cd_dens = []; ec_data.rho_max_cd_dens_label = []; ec_data.width_cd_dens = []; ec_data.width_cd_dens_label = []; ec_data.cd_dens_doublewidth = []; ec_data.cd_dens_doublewidth_label = []; ec_data.rho_tor_norm = []; ec_data.t = []; ec_data.launchers = []; gdat_data.ec.ec_data = ec_data; return end gdat_data.ec.ec_data = ec_data; if isempty(icdtot.data) || isempty(icdtot.tgrid) || ischar(icdtot.data) if (gdat_params.nverbose>=1) warning(['problems loading data for ' source_icd.ec ... ' for data_request= ' data_request_eff]); end else % now default is icdtot, will depend on request and data_out param of some kind data_fullpath = ['from toray nodes using astra_tcv_EC_exp(shot), all results in .ec_data, subfield=' field_for_main_data ... 'in ec.data, .x, .t, .dim, .dimunits, .label, .units']; for subfields={'data','x','t','units','dim','dimunits','label'} gdat_data.ec.(subfields{1}) = gdat_data.ec.ec_data.(field_for_main_data).(subfields{1}); end gdat_data.ec.data_fullpath = data_fullpath; gdat_data.ec.help = ec_help; % add to main, assume 1st one so just use this time base and x base % should find launcher tot index gdat_data.data(end+1,:) = gdat_data.ec.data(end,:); gdat_data.t = gdat_data.ec.t; if ischar(gdat_data.label); gdat_data.label = []; end; % label was defined in tcv_mapping_request as char so replace 1st time gdat_data.label{end+1}=gdat_data.ec.label; end end % if any(strmatch('nb',gdat_data.gdat_params.source)) NBH_in_TCV = 0; if shot >= 51641 % NBI moderemote = mdsdata('data(\VSYSTEM::TCV_NBHDB_B["NBI:MODEREMOTE_FB"])'); lcs_mode = mdsdata('data(\VSYSTEM::TCV_NBHDB_I["NBI:LCS_MODE"])'); % NBH in TCV equiv moderemote='ON' AND lcs_mode = 9 NBH_in_TCV = strcmpi(strtrim(moderemote),'ON') && lcs_mode == 9; else % Nodes used in previous block only exist outside of Vista for shots after 51641 if any(shot == [51458 51459 51460 51461 51463 51465 51470 51472 ... % 29.JAN.2016 51628 51629 51631 51632 51633 ... % 09.FEB.2016 51639 51640 ... 51641 % 10.FEB.2016 ]) NBH_in_TCV = 1; end end if NBH_in_TCV % should add reading from file at this stage ala summary Karpushov end end % if any(strmatch('ohm',gdat_data.gdat_params.source)) data_fullpath = ''; ohm_help = ''; if strcmp(lower(source_icd.ohm),'ibs') ohm_data.cd_tot = gdat_tcv(shot,'\results::ibs:iohm'); ohm_data.cd_tot.data = ohm_data.cd_tot.data'; ohm_data.cd_tot.units = strrep(ohm_data.cd_tot.units,'kA','A'); ohm_data.cd_dens = gdat_tcv(shot,'\results::ibs:johmav'); % =jtild=<j.B> / R0 / <Bphi/R>, with Bphi=F(psi)/R ohm_data.cd_dens.units = strrep(ohm_data.cd_dens.units,'kA','A'); abc=get_grids_1d(ohm_data.cd_dens,1,1); ohm_data.cd_dens.rhotor_norm = abc.grids_1d.rhotornorm; ohm_data.cd_dens.rhopol_norm = abc.grids_1d.rhopolnorm; ohm_help = 'from IBS ohm related nodes, from Iohm=Ip-Icd-Ibs assuming stationary state'; else disp(['source_icd.ohm = ' source_icd.ohm ' not yet implemented, ask O. Sauter']) for subfields={'cd_tot','cd_dens'}; for subsubfields={'data','x','t','units','dim','dimunits','label','rhotor_norm','rhopol_norm'} ohm_data.(subfields{1}).(subsubfields{1}) = []; end end end gdat_data.ohm.ohm_data = ohm_data; data_fullpath = ['from ibs:ohmic related nodes, all results in .ohm_data, subfield=' field_for_main_data ... 'in ohm.data, .x, .t, .dim, .dimunits, .label, .units']; for subfields={'data','x','t','units','dim','dimunits','label'} gdat_data.ohm.(subfields{1}) = gdat_data.ohm.ohm_data.(field_for_main_data).(subfields{1}); end if isempty(gdat_data.t); gdat_data.t = gdat_data.ohm.t; end gdat_data.ohm.data_fullpath = data_fullpath; gdat_data.ohm.help = ohm_help; gdat_data.data(end+1,:) = interpos(gdat_data.ohm.t,gdat_data.ohm.data,gdat_data.t,-0.1); gdat_data.label{end+1}=gdat_data.ohm.label; end % if any(strmatch('bs',gdat_data.gdat_params.source)) data_fullpath = ''; bs_help = ''; if strcmp(lower(source_icd.bs),'ibs') bs_data.cd_tot = gdat_tcv(shot,'\results::ibs:ibs'); bs_data.cd_tot.data = bs_data.cd_tot.data'; bs_data.cd_tot.units = strrep(bs_data.cd_tot.units,'kA','A'); bs_data.cd_dens = gdat_tcv(shot,'\results::ibs:jbsav'); % =jtild=<j.B> / R0 / <Bphi/R>, with Bphi=F(psi)/R bs_data.cd_dens.units = strrep(bs_data.cd_dens.units,'kA','A'); abc=get_grids_1d(bs_data.cd_dens,1,1); bs_data.cd_dens.rhotor_norm = abc.grids_1d.rhotornorm; bs_data.cd_dens.rhopol_norm = abc.grids_1d.rhopolnorm; bs_help = 'from IBS bs related nodes, from Ibs=Ip-Icd-Ibs assuming stationary state'; else disp(['source_icd.bs = ' source_icd.bs ' not yet implemented, ask O. Sauter']) for subfields={'cd_tot','cd_dens'}; for subsubfields={'data','x','t','units','dim','dimunits','label','rhotor_norm','rhopol_norm'} bs_data.(subfields{1}).(subsubfields{1}) = []; end end end gdat_data.bs.bs_data = bs_data; data_fullpath = ['from ibs:bsic related nodes, all results in .bs_data, subfield=' field_for_main_data ... 'in bs.data, .x, .t, .dim, .dimunits, .label, .units']; for subfields={'data','x','t','units','dim','dimunits','label'} gdat_data.bs.(subfields{1}) = gdat_data.bs.bs_data.(field_for_main_data).(subfields{1}); end if isempty(gdat_data.t); gdat_data.t = gdat_data.bs.t; end gdat_data.bs.data_fullpath = data_fullpath; gdat_data.bs.help = bs_help; gdat_data.data(end+1,:) = interpos(gdat_data.bs.t,gdat_data.bs.data,gdat_data.t,-0.1); gdat_data.label{end+1}=gdat_data.bs.label; end % % add all to last index of .data(:,i) gdat_data.data(end+1,:) = sum(gdat_data.data,1,'omitnan'); gdat_data.x = [1:size(gdat_data.data,1)]; gdat_data.label{end+1}='total'; gdat_data.dim{1} = gdat_data.x; gdat_data.dim{2} = gdat_data.t; gdat_data.dimunits = {['index for each main source + total ' field_for_main_data], 's'}; gdat_data.data_fullpath = 'see in individual source substructure'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'mhd'} if isfield(gdat_data.gdat_params,'nfft') && ~isempty(gdat_data.gdat_params.nfft) % used in gdat_plot for spectrogram plot else gdat_data.gdat_params.nfft = 1024; end % load n=1, 2 and 3 Bdot from magnetic measurements n3.data = []; if shot< 50926 n1=tdi('abs(mhdmode("LFS",1,1))'); n2=tdi('abs(mhdmode("LFS",2,1))'); n3=tdi('abs(mhdmode("LFS",3,1))'); gdat_data.data_fullpath='abs(mhdmode("LFS",n,1));% for 1, 2, 3'; else if isfield(gdat_data.gdat_params,'source') && ~isempty(gdat_data.gdat_params.source) % gdat_data.gdat_params.source; else gdat_data.gdat_params.source = '23'; end if length(gdat_data.gdat_params.source)>=2 && strcmp(gdat_data.gdat_params.source(1:2),'23') aaLFSz23_sect3=tdi('\atlas::DT196_MHD_001:channel_067'); aaLFSz23_sect11=tdi('\atlas::DT196_MHD_001:channel_075'); n1 = aaLFSz23_sect3; n1.data = aaLFSz23_sect3.data - aaLFSz23_sect11.data; n2 = aaLFSz23_sect3; n2.data = aaLFSz23_sect3.data + aaLFSz23_sect11.data; % n3=n1; gdat_data.data_fullpath='\atlas::DT196_MHD_001:channel_067 -+ \atlas::DT196_MHD_001:channel_075 for n=1,2, LFS_sect_3/11, z=23cm'; if strcmp(gdat_data.gdat_params.source,'23full') % HFS from sec 3 and 11 aaHFSz23_sect3=tdi('\atlas::DT196_MHD_002:channel_018'); aaHFSz23_sect11=tdi('\atlas::DT196_MHD_002:channel_022'); gdat_data.n1_HFS=aaHFSz23_sect3; gdat_data.n1_HFS.data = gdat_data.n1_HFS.data - aaHFSz23_sect11.data; gdat_data.n2_HFS=aaHFSz23_sect3; gdat_data.n2_HFS.data = gdat_data.n2_HFS.data + aaHFSz23_sect11.data; gdat_data.data_fullpath=['\atlas::DT196_MHD_001:channel_067 -+ \atlas::DT196_MHD_001:channel_075 for n=1,2, LFS_sect_3/11, z=23cm; _HFS' ... ' same for sector HFS: MHD_002:channel_018-+MHD_002:channel_022']; end elseif strcmp(gdat_data.gdat_params.source(1),'0') aaLFSz0_sect3=tdi('\atlas::DT196_MHD_001:channel_083'); aaLFSz0_sect11=tdi('\atlas::DT196_MHD_001:channel_091'); n1 = aaLFSz0_sect3; n1.data = aaLFSz0_sect3.data - aaLFSz0_sect11.data; n2 = aaLFSz0_sect3; n2.data = aaLFSz0_sect3.data + aaLFSz0_sect11.data; % n3=n1; gdat_data.data_fullpath='\atlas::DT196_MHD_001:channel_083 -+ \atlas::DT196_MHD_001:channel_091 for n=1,2, LFS_sect_3/11, z=0cm'; if strcmp(gdat_data.gdat_params.source,'0full') % sect 11 180deg from sec 3 aaHFSz0_sect3=tdi('\atlas::DT196_MHD_002:channel_034'); aaHFSz0_sect11=tdi('\atlas::DT196_MHD_002:channel_038'); gdat_data.n1_HFS=aaHFSz0_sect11; gdat_data.n1_HFS.data = gdat_data.n1_HFS.data - aaHFSz0_sect11.data; gdat_data.n2_HFS=aaHFSz0_sect11; gdat_data.n2_HFS.data = gdat_data.n2_HFS.data + aaHFSz0_sect11.data; gdat_data.data_fullpath=['\atlas::DT196_MHD_001:channel_083 -+ \atlas::DT196_MHD_001:channel_091 for n=1,2, LFS_sect3/11, z=0cm; _HFS' ... ' same for HFS: MHD_002:channel_034-+MHD_002:channel_038']; end else disp('should not be here in ''mhd'', ask O. Sauter') return end end if ~isempty(n1.data) gdat_data.data(:,1) = reshape(n1.data,length(n1.data),1); if length(n2.data)==length(n1.data); gdat_data.data(:,2) = reshape(n2.data,length(n2.data),1); end if length(n3.data)==length(n1.data); gdat_data.data(:,3) = reshape(n3.data,length(n3.data),1); end gdat_data.dim{1} = n1.dim{1}; gdat_data.t = gdat_data.dim{1}; gdat_data.dim{2} = [1; 2; 3]; gdat_data.dimunits{1} = n1.dimunits{1}; gdat_data.dimunits{2} = 'n number'; if shot>= 50926 gdat_data.dimunits{2} = 'n number, at this stage n3=n1'; gdat_data.dimunits{2} = 'n number, at this stage n3 not computed'; end gdat_data.units = 'T/s'; gdat_data.request_description = 'delta_Bdot from magnetic probes to get n=1/odd, 2/even and 3'; gdat_data.label = {'n=1','n=2','n=3'}; % can be used in legend(gdat_data.label) if shot>= 50926 gdat_data.label = {'n odd','n even'}; % can be used in legend(gdat_data.label) end end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'ne','te'} % ne or Te from Thomson data on raw z mesh vs (z,t) if ~(isfield(gdat_data.gdat_params,'edge') && ~isempty(gdat_data.gdat_params.edge) && ... gdat_data.gdat_params.edge>0) gdat_data.gdat_params.edge = 0; end [gdat_data] = get_thomson_raw_data(shot,data_request_eff,gdat_data,gdat_data.gdat_params.edge,gdat_params.nverbose); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'ne_rho', 'te_rho', 'nete_rho'} % if nete_rho, do first ne, then Te later (so fir stuff already done) zshift = 0.; if isfield(gdat_data.gdat_params,'zshift') && ~isempty(gdat_data.gdat_params.zshift) zshift = gdat_data.gdat_params.zshift; else gdat_data.gdat_params.zshift = zshift; end if ~(isfield(gdat_data.gdat_params,'edge') && ~isempty(gdat_data.gdat_params.edge) && ... gdat_data.gdat_params.edge>0) gdat_data.gdat_params.edge = 0; end [gdat_data] = get_thomson_raw_data(shot,data_request_eff,gdat_data,gdat_data.gdat_params.edge,gdat_params.nverbose); % construct rho mesh edge_str_ = ''; edge_str_dot = ''; if gdat_data.gdat_params.edge edge_str_ = '_edge'; edge_str_dot = '.edge'; end if liuqe_matlab==1 && strcmp(substr_liuqe,'_1'); substr_liuqe = ''; end % psiscatvol obtained from linear interpolation in fact so not quite ok near axis where psi is quadratic recompute_psiscatvol_always = 1; if liuqe_version==-1; recompute_psiscatvol_always = 1; end if all(abs(zshift)<1e-5) && liuqe_matlab==0 && recompute_psiscatvol_always==0 psi_max=gdat_tcv([],['\results::thomson' edge_str_dot ':psi_max' substr_liuqe],'nverbose',gdat_params.nverbose); psiscatvol=gdat_tcv([],['\results::thomson' edge_str_dot ':psiscatvol' substr_liuqe],'nverbose',gdat_params.nverbose); else % calculate new psiscatvol if liuqe_matlab==0 psitdi = tdi(['tcv_eq(''psi'',''LIUQE' substr_liuqe_tcv_eq ''')']); psiaxis = tdi(['tcv_eq(''psi_axis'',''LIUQE' substr_liuqe_tcv_eq ''')']); else psitdi = tdi(['tcv_eq(''psi'',''LIUQE.M' substr_liuqe_tcv_eq ''')']); psiaxis = tdi(['tcv_eq(''psi_axis'',''LIUQE.M' substr_liuqe_tcv_eq ''')']); end if numel(psitdi.dim)<1 warning('problem with psitdi in gdat_tcv ') psitdi psiaxis return end rmesh=psitdi.dim{1}; zmesh=psitdi.dim{2}; zthom=mdsdata(['dim_of(\thomson' edge_str_dot ':te,1)']); zeffshift=zshift; % set zeffshift time array same as psitdi switch length(zeffshift) case 1 zeffshift=zeffshift * ones(size(psitdi.dim{3})); case length(psitdi.dim{3}) % ok case length(gdat_data.t) zeffshift=interp1(gdat_data.t,zeffshift,psitdi.dim{3}); otherwise if (gdat_params.nverbose>=1); disp(' bad time dimension for zshift') disp(['it should be 1 or ' num2str(length(gdat_data.t)) ' or ' num2str(length(psitdi.dim{3}))]) end end for it=1:length(gdat_data.t) itpsitdi=iround_os(psitdi.dim{3},gdat_data.t(it)); psirz=psitdi.data(:,:,itpsitdi); %psiscatvol0=interp2(rmesh,zmesh,psirz',0.9*ones(size(zthom)),zthom-zeffshift(itpsitdi),'spline'); % faster with interpos psiscatvol0=interpos2Dcartesian(rmesh,zmesh,psirz,0.9*ones(size(zthom)),zthom-zeffshift(itpsitdi),-0.1,-0.1); %psiscatvol0=interp2(rmesh,zmesh,psirz',0.9*ones(size(zthom)),zthom-zeffshift(itpsitdi),'linear'); psiscatvol.data(it,:)=psiscatvol0; % since take closest psi(R,Z) from psitdi, should also take closest for psi_max and not interpolating itpsiaxis = iround_os(psiaxis.dim{1},gdat_data.t(it)); psi_max.data(it,1) = psiaxis.data(itpsiaxis); end psiscatvol.dim{1} = gdat_data.t; psiscatvol.dim{2} = gdat_data.x; end if ~isempty(psiscatvol.data) && ~ischar(psiscatvol.data) && ~isempty(psi_max.data) && ~ischar(psi_max.data) for ir=1:length(psiscatvol.dim{2}) rho2 = max(1.-psiscatvol.data(:,ir)./psi_max.data,0); rho(ir,:)= sqrt(rho2'); % rho(ir,:)= sqrt(1.-psiscatvol.data(:,ir)./psi_max.data(:))'; end else if gdat_params.nverbose>=1 && gdat_data.gdat_params.edge==0 warning(['psiscatvol empty?, no rho calculated for data_request = ' data_request_eff]); end rho=[]; end gdat_data.dim{1}=rho; gdat_data.dimunits=[{'sqrt(psi_norm)'} ; {'time [s]'}]; gdat_data.x=rho; % add grids_1d to have rhotor, etc if cxrs_rho was asked for gdat_data = get_grids_1d(gdat_data,2,1,gdat_params.nverbose); %%%%%%%%%%% % if nete_rho, copy data as .ne, get .te and put pe=e ne Te in data: if strcmp(data_request_eff(1:4),'nete') % note, now has ne.data_raw for density without fir_to_thomson_ratio gdat_data.ne.data = gdat_data.data; gdat_data.ne.data_raw = gdat_data.data_raw; gdat_data.ne.error_bar = gdat_data.error_bar; gdat_data.ne.error_bar_raw = gdat_data.error_bar_raw; gdat_data.ne.firrat=gdat_data.firrat; gdat_data.ne.units = 'm^{-3}'; gdat_data = rmfield(gdat_data,{'firrat','data_raw','error_bar_raw'}); % nodenameeff=['\results::thomson' edge_str_dot ':te']; tracetdi=tdi(nodenameeff); nodenameeff=['\results::thomson' edge_str_dot ':te; error_bar']; tracestd=tdi(['\results::thomson' edge_str_dot ':te:error_bar']); gdat_data.te.data=tracetdi.data'; gdat_data.te.error_bar=tracestd.data'; gdat_data.te.units = tracetdi.units; gdat_data.data_fullpath=['pe=1.6e-19*ne*Te in data, .ne, .te from \results::thomson' ... edge_str_dot ':ne and te and projected on rhopol\_norm']; gdat_data.units='N/m^2; 1.6022e-19 ne Te'; gdat_data.data = 1.6022e-19 .* gdat_data.ne.data .* gdat_data.te.data; gdat_data.error_bar = 1.6022e-19 .* (gdat_data.ne.data .* gdat_data.te.error_bar ... + gdat_data.te.data .* gdat_data.ne.error_bar); end %%%%%%%%%%% add fitted profiles if 'fit'>=1 default_fit_type = 'conf'; if ~isfield(gdat_data.gdat_params,'fit') || isempty(gdat_data.gdat_params.fit) gdat_data.gdat_params.fit = 1; end % add empty structure for fit so results is always the same with or without call to fit=1 or 0 gdat_data.fit.data = []; gdat_data.fit.x = []; gdat_data.fit.t = []; gdat_data.fit.units = []; gdat_data.fit.data_fullpath = []; if strcmp(data_request_eff(1:4),'nete') % note gdat_data.fit.data level is for pe gdat_data.fit.ne.data = []; gdat_data.fit.ne.x = []; gdat_data.fit.ne.t = []; gdat_data.fit.ne.units = []; gdat_data.fit.ne.data_fullpath = []; gdat_data.fit.te.data = []; gdat_data.fit.te.x = []; gdat_data.fit.te.t = []; gdat_data.fit.te.units = []; gdat_data.fit.te.data_fullpath = []; end if gdat_data.gdat_params.fit>0 % default is from proffit:avg_time if ~(isfield(gdat_data.gdat_params,'fit_type') && ~isempty(gdat_data.gdat_params.fit_type)) || ~any(strcmp(gdat_data.gdat_params.fit_type,{'local', 'avg', 'conf'})) gdat_data.gdat_params.fit_type = default_fit_type; end switch gdat_data.gdat_params.fit_type case 'avg' def_proffit = '\results::proffit.avg_time:'; case 'local' def_proffit = '\results::proffit.local_time:'; case 'conf' def_proffit = '\results::conf:'; otherwise if (gdat_params.nverbose>=1); disp('should not be in switch gdat_data.gdat_params.fit_type') disp('ask olivier.sauter@epfl.ch') end return end if strcmp(gdat_data.gdat_params.fit_type,'conf') nodenameeff = [def_proffit data_request_eff(1:2)]; else if strcmp(data_request_eff(1:2),'ne') nodenameeff = [def_proffit 'neft_abs']; % do first ne if nete asked for elseif strcmp(data_request_eff(1:2),'te') nodenameeff = [def_proffit 'teft']; else if (gdat_params.nverbose>=1); disp(['should not be here: data_request_eff, data_request_eff(1:2)= ',data_request_eff, data_request_eff(1:2)]); end end end if isfield(gdat_data.gdat_params,'trialindx') && ~isempty(gdat_data.gdat_params.trialindx) && ... gdat_data.gdat_params.trialindx>=0 nodenameeff=[nodenameeff ':trial']; trialindx = gdat_data.gdat_params.trialindx; else gdat_data.gdat_params.trialindx = []; trialindx = []; end tracetdi=tdi(nodenameeff); if isempty(trialindx) if ~isempty(tracetdi.data) && ~isempty(tracetdi.dim) && ~ischar(tracetdi.data) gdat_data.fit.data = tracetdi.data; else if gdat_params.nverbose>=1 disp([nodenameeff ' is empty, thus no fits, check hldsi(shot) and may need to run anaprofs?']) end if strcmp(data_request_eff(1:4),'nete') gdat_data.fit.ne.data_fullpath = [nodenameeff ' is empty']; gdat_data.fit.te.data_fullpath = [nodenameeff ' is empty']; else gdat_data.fit.data_fullpath = [nodenameeff ' is empty']; end return end else if ~isempty(tracetdi.data) && size(tracetdi.data,3)>=trialindx+1 gdat_data.fit.data = tracetdi.data(:,:,trialindx+1); else if gdat_params.nverbose>=1 disp([nodenameeff ' with trialindx=' num2str(trialindx) ' is empty, thus no fits, check hldsi(shot) and may need to run anaprofs?']) end gdat_data.fit.data_fullpath = [nodenameeff ' with trialindx=' num2str(trialindx) ' is empty']; return end end gdat_data.fit.x=tracetdi.dim{1}; gdat_data.fit.t=tracetdi.dim{2}; if mapping_for_tcv.timedim~=2 | mapping_for_tcv.gdat_timedim~=2 if (gdat_params.nverbose>=1); disp(['unexpected timedim in fit: data_request_eff= ' data_request_eff ... ', mapping_for_tcv.timedim= ' mapping_for_tcv.timedim ... ', mapping_for_tcv.gdat_timedim= ' mapping_for_tcv.gdat_timedim]); end end if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.fit.units=tracetdi.units; end gdat_data.fit.data_fullpath = nodenameeff; % do te as well if nete asked for if strcmp(data_request_eff(1:4),'nete') gdat_data.fit.ne.data = gdat_data.fit.data; gdat_data.fit.ne.x = gdat_data.fit.x; gdat_data.fit.ne.t = gdat_data.fit.t; gdat_data.fit.ne.units = gdat_data.fit.units; gdat_data.fit.ne.data_fullpath = gdat_data.fit.data_fullpath; if strcmp(gdat_data.gdat_params.fit_type,'conf') nodenameeff = [def_proffit 'te']; else nodenameeff = [def_proffit 'teft']; end if ~isempty(trialindx); nodenameeff=[nodenameeff ':trial']; end tracetdi=tdi(nodenameeff); if isempty(trialindx) gdat_data.fit.te.data = tracetdi.data; else if ~isempty(tracetdi.data) && size(tracetdi.data,3)>=trialindx+1 gdat_data.fit.te.data = tracetdi.data(:,:,trialindx+1); else return end end gdat_data.fit.te.x = gdat_data.fit.ne.x; gdat_data.fit.te.t = gdat_data.fit.ne.t; if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.fit.te.units=tracetdi.units; end gdat_data.fit.te.data_fullpath = [nodenameeff]; % construct pe=1.6022e-19*ne*te gdat_data.fit.data = 1.6022e-19.*gdat_data.fit.ne.data .* gdat_data.fit.te.data; gdat_data.fit.units = 'N/m^2; 1.6022e-19 ne Te'; gdat_data.fit.data_fullpath = [gdat_data.fit.data_fullpath ' ; ' nodenameeff ' and pe in data']; end else gdat_data.gdat_params.fit_type = default_fit_type; end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'powers'} % note: same time array for all main, ec, ohm, nbi, ... % At this stage fill just ech, later add nbi sources_avail = {'ohm','ec','nbi','rad'}; % note should allow ech, nbh, ohmic in parameter sources % create empty structures for all, so in return one always have same substructres for i=1:length(sources_avail) gdat_data.(sources_avail{i}).data = []; gdat_data.(sources_avail{i}).units = []; gdat_data.(sources_avail{i}).dim=[]; gdat_data.(sources_avail{i}).dimunits=[]; gdat_data.(sources_avail{i}).t=[]; gdat_data.(sources_avail{i}).x=[]; gdat_data.(sources_avail{i}).data_fullpath=[]; gdat_data.(sources_avail{i}).label=[]; end if ~isfield(gdat_data.gdat_params,'source') || isempty(gdat_data.gdat_params.source) gdat_data.gdat_params.source = sources_avail; elseif ~iscell(gdat_data.gdat_params.source) if ischar(gdat_data.gdat_params.source) gdat_data.gdat_params.source = lower(gdat_data.gdat_params.source); if ~any(strmatch(gdat_data.gdat_params.source,lower(sources_avail))) if (gdat_params.nverbose>=1) warning(['source= ' gdat_data.gdat_params.source ' is not part of the available sources: ' sprintf('''%s'' ',sources_avail{:})]); end return else gdat_data.gdat_params.source = {gdat_data.gdat_params.source}; end else if (gdat_params.nverbose>=1); warning([' source parameter not compatible with: ' sprintf('''%s'' ',sources_avail{:})]); end return end else for i=1:length(gdat_data.gdat_params.source) gdat_data.gdat_params.source{i} = lower(gdat_data.gdat_params.source{i}); if ~any(strmatch(gdat_data.gdat_params.source{i},lower(sources_avail))) if gdat_data.gdat_params.nverbose>=1 warning(['source = ' gdat_data.gdat_params.source{i} ' not expected with data_request= ' data_request_eff]) end end end end % always start from ohmic so can use this time as base time since should yield full shot % get ohmic power simply from vloop*Ip (minus sign for TCV), neglect dWp/dt could add it later, see chie_tcv_to_nodes % thus should take it from conf if present mdsopen(shot); ptot_ohm = tdi('\results::conf:ptot_ohm'); if ~isempty(ptot_ohm.data) && ~ischar(ptot_ohm.data) && ~isempty(ptot_ohm.dim) gdat_data.ohm.data = ptot_ohm.data; gdat_data.ohm.t = ptot_ohm.dim{1}; gdat_data.ohm.dim = ptot_ohm.dim; gdat_data.ohm.dimunits = ptot_ohm.dimunits; gdat_data.ohm.units = ptot_ohm.units; gdat_data.ohm.data_fullpath = '\results::conf:ptot_ohm'; gdat_data.ohm.help = ptot_ohm.help; else params_eff = gdat_data.gdat_params; params_eff.data_request='ip'; % to make sure to use input params like liuqe option ip=gdat_tcv([],params_eff); %gdat_tcv to avoid plotting in case doplot=1 if using gdat and to save time params_eff.data_request='vloop'; vloop=gdat_tcv([],params_eff); gdat_data.ohm.t = vloop.t; gdat_data.ohm.dim{1} = gdat_data.t; gdat_data.dimunits{1} = 's'; gdat_data.units = 'W'; tension = -1e5; vloop_smooth=interpos(vloop.t,vloop.data,gdat_data.ohm.t,tension); ip_t = interp1(ip.t,ip.data,gdat_data.ohm.t); gdat_data.ohm.data = -vloop_smooth.*ip_t; % TCV has wrong sign for Vloop gdat_data.ohm.raw_data = -vloop.data.*ip_t; gdat_data.ohm.data_fullpath = 'from vloop*Ip, smoothed vloop in data, unsmoothed in raw_data'; gdat_data.ohm.data_fullpath=['from -vloop(tens=' num2str(tension,'%.0e') ')*ip, from gdat, in .data, unsmoothed in .raw_data']; end gdat_data.ohm.x=[]; gdat_data.ohm.label='P_{ohm}'; % % add each source in main.data, on ohm time array gdat_data.t = linspace(gdat_data.ohm.t(1),gdat_data.ohm.t(end),floor(1e4.*(gdat_data.ohm.t(end)-gdat_data.ohm.t(1))))'; ij=[isfinite(gdat_data.ohm.data)]; gdat_data.data(:,1) = interpos(-21,gdat_data.ohm.t(ij),gdat_data.ohm.data(ij),gdat_data.t); gdat_data.dim{1} = gdat_data.t; gdat_data.x(1) = 1; gdat_data.label={'P_{ohm}'}; gdat_data.units = 'W'; % if any(strmatch('ec',gdat_data.gdat_params.source)) % EC nodenameeff='\results::toray.input:p_gyro'; tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) || ischar(tracetdi.data) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end else gdat_data.ec.data = tracetdi.data*1e3; % at this stage p_gyro is in kW' gdat_data.ec.units = 'W'; gdat_data.ec.dim=tracetdi.dim; gdat_data.ec.dimunits=tracetdi.dimunits; gdat_data.ec.t=tracetdi.dim{1}; gdat_data.ec.x=tracetdi.dim{2}; gdat_data.ec.data_fullpath=[nodenameeff]; gdat_data.ec.label='P_{EC}'; gdat_data.ec.help = tracetdi.help; % add to main with linear interpolation and 0 for extrapolated values gdat_data.data(:,end+1) = interpos(-21,gdat_data.ec.t,gdat_data.ec.data(:,end),gdat_data.t); gdat_data.x(end+1) = size(gdat_data.data,2); gdat_data.label{end+1}=gdat_data.ec.label; end end % if any(strmatch('nb',gdat_data.gdat_params.source)) NBH_in_TCV = 0; if shot >= 51641 % NBI moderemote = mdsdata('data(\VSYSTEM::TCV_NBHDB_B["NBI:MODEREMOTE_FB"])'); lcs_mode = mdsdata('data(\VSYSTEM::TCV_NBHDB_I["NBI:LCS_MODE"])'); % NBH in TCV equiv moderemote='ON' AND lcs_mode = 9 NBH_in_TCV = strcmpi(strtrim(moderemote),'ON') && lcs_mode == 9; else % Nodes used in previous block only exist outside of Vista for shots after 51641 if any(shot == [51458 51459 51460 51461 51463 51465 51470 51472 ... % 29.JAN.2016 51628 51629 51631 51632 51633 ... % 09.FEB.2016 51639 51640 ... 51641 % 10.FEB.2016 ]) NBH_in_TCV = 1; end end if NBH_in_TCV nodenameeff = '\results::NBH:POWR_TCV'; nbh_data_tdi = tdi(nodenameeff); if ~isempty(nbh_data_tdi.data) && ~ischar(nbh_data_tdi.data) && ~isempty(nbh_data_tdi.dim) nbi_neutral_power_tot = nbh_data_tdi.data.*1e6; % in W nbi_neutral_power_tot = max(nbi_neutral_power_tot,0.); gdat_data.nbi.data = nbi_neutral_power_tot; % at this stage p_gyro is in kW' gdat_data.nbi.units = 'W'; gdat_data.nbi.dim{1}=nbh_data_tdi.dim{1}; gdat_data.nbi.dimunits{1}=nbh_data_tdi.dimunits{1}; gdat_data.nbi.t=gdat_data.nbi.dim{1}; gdat_data.nbi.x=[]; gdat_data.nbi.data_fullpath=[nodenameeff]; gdat_data.nbi.label='P_{nbi}'; gdat_data.nbi.help = nbh_data_tdi.help; nodenameeff2 = '\results::nbh:energy'; gdat_data.nbi.data_fullpath=[nodenameeff ' *1e6 for W; and ' nodenameeff2 ' *1e3 for eV']; nbh_energy_data_tdi = tdi(nodenameeff2); gdat_data.nbi.energy = nbh_energy_data_tdi.data*1e3; % for eV % add to main with linear interpolation and 0 for extrapolated values ij=[isfinite(gdat_data.nbi.data)]; gdat_data.data(:,end+1) = interpos(-21,gdat_data.nbi.t(ij),gdat_data.nbi.data(ij),gdat_data.t); gdat_data.x(end+1) = size(gdat_data.data,2); gdat_data.label{end+1}=gdat_data.nbi.label; end end end % index_rad = []; if any(strmatch('rad',gdat_data.gdat_params.source)) % RAD nodenameeff='\results::bolo:prad:total'; tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) || ischar(tracetdi.data) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end else gdat_data.rad.data = tracetdi.data*1e3; % at this stage bolo is in kW' gdat_data.rad.units = 'W'; gdat_data.rad.dim=tracetdi.dim; gdat_data.rad.dimunits=tracetdi.dimunits; gdat_data.rad.t=tracetdi.dim{1}; gdat_data.rad.data_fullpath=[nodenameeff]; gdat_data.rad.label='P_{RAD}'; gdat_data.rad.help = tracetdi.help; % add to main with linear interpolation and 0 for extrapolated values gdat_data.data(:,end+1) = interpos(-21,gdat_data.rad.t,gdat_data.rad.data(:,end),gdat_data.t); index_rad = size(gdat_data.data,2); gdat_data.x(end+1) = size(gdat_data.data,2); gdat_data.label{end+1}=gdat_data.rad.label; end end % add all to last index of .data(:,i) ij = setdiff([1:size(gdat_data.data,2)],index_rad); gdat_data.data(:,end+1) = sum(gdat_data.data(:,ij),2); gdat_data.x(end+1) = size(gdat_data.data,2); gdat_data.label{end+1}='total heating'; gdat_data.dim{2} = gdat_data.x; gdat_data.dimunits = {'s', 'index for each source + total heating'}; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'q_rho'} % q profile on psi from liuqe if liuqe_matlab==0 nodenameeff=['tcv_eq(''q_psi'',''LIUQE' substr_liuqe_tcv_eq ''')']; else nodenameeff=['tcv_eq(''q'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; end if liuqe_version_eff==-1 nodenameeff=[begstr 'q_psi' substr_liuqe]; end tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{2}; gdat_data.data_fullpath=[nodenameeff ' on rhopol']; if liuqe_matlab==0 rhopol_eff = ones(size(tracetdi.dim{1})); rhopol_eff(:) = sqrt(linspace(0,1,length(tracetdi.dim{1}))); gdat_data.dim{1} = rhopol_eff; end gdat_data.x = gdat_data.dim{1}; gdat_data.dimunits{1} = 'rho_pol~sqrt(\psi_norm)'; gdat_data.dimunits{2} = 's'; gdat_data.units = ''; gdat_data.request_description = 'q(rhopol\_norm)'; % add grids_1d to have rhotor, etc gdat_data = get_grids_1d(gdat_data,1,1,gdat_params.nverbose); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'rbphi_rho', 'rbtor_rho'} % R*Bphi(rho,t) from F from FFprime if liuqe_matlab==0 disp('not yet implemented for liuqe fortran') return else nodenameeff=['tcv_eq(''rbtor_rho'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; end if liuqe_version_eff==-1 disp('not yet implemented for fbte') return end tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{2}; gdat_data.data_fullpath=[nodenameeff ' on rhopol']; if liuqe_matlab==0 rhopol_eff = ones(size(tracetdi.dim{1})); rhopol_eff(:) = sqrt(linspace(0,1,length(tracetdi.dim{1}))); gdat_data.dim{1} = rhopol_eff; end gdat_data.x = gdat_data.dim{1}; gdat_data.dimunits{1} = 'rho_pol~sqrt(\psi_norm)'; gdat_data.dimunits{2} = 's'; gdat_data.units = ''; gdat_data.request_description = nodenameeff; % add grids_1d to have rhotor, etc gdat_data = get_grids_1d(gdat_data,1,1,gdat_params.nverbose); case {'phi_tor', 'phitor', 'toroidal_flux'} % Phi(LCFS) = int(Bphi dSphi), can use Eq.(11) of "Tokamak coordinate conventions: COCOS" paper: % O. Sauter, S.Yu. Medvedev, Comput. Phys. Commun. 184 (2013) 293–302 % since cocos=17 for LIUQE we get: % q = -dPhi/dpsi => Phi = - int(q*dpsi) which should always have the sign of B0 % need to get q_rho but to avoid loop for rhotor in grids_1d, get q_rho explicitely here params_eff = gdat_data.gdat_params; if liuqe_matlab==1 nodenameeff = ['tcv_eq(''tor_flux_tot'',''' psitbx_str ''')']; phi_tor = tdi(nodenameeff); else phi_tor.data = []; phi_tor.units = 'Wb'; end if ~any(any(isfinite(phi_tor.data))) || ischar(phi_tor.data) % no phi_tor, compute it from q profile q_rho = tdi(['tcv_eq(''''''' liuqefortran2liuqematlab('q',1,liuqe_matlab) ''''''',''''''' psitbx_str ''''''')']); if liuqe_matlab==0 q_rho.dim{1} = sqrt(linspace(0,1,numel(q_rho.dim{1}))); end phi_tor.dim = q_rho.dim; phi_tor.dimunits = q_rho.dimunits; params_eff.data_request='psi_axis'; % psi_edge=0 with LIUQE psi_axis=gdat_tcv(shot,params_eff); if isnumeric(q_rho.data) for it=1:size(q_rho.data,2) ij=find(isfinite(q_rho.data(:,it))); if ~isempty(ij) && numel(ij)>5 [qfit,~,~,phi]=interpos(-43,q_rho.dim{1}(ij).^2,q_rho.data(ij,it),phi_tor.dim{1}.^2); % Phi=sigma_bp*sigma_rhothetaphi*(2pi)^(1-eBp)*int(q dpsi), dpsi=dpsi_norm * (psiedge-psaxis) % cocos=17: sigma_Bp=-1,sigma_rhothetaphi=1, eBp=1, (psiedge-psaxis)=-psiaxis phi = -1.* phi .* (-psi_axis.data(it)); phi_tor.data(:,it) = phi'; end end else phi_tor.data = []; end elseif any(any(~isfinite(phi_tor.data))) % there are some non-finite values, usually edge values, so replace them with integrated values only_edge = 0; if any(any(~isfinite(phi_tor.data(1:end-1,:)))) only_edge = 1; end q_rho = tdi(['tcv_eq(''''''' liuqefortran2liuqematlab('q',1,liuqe_matlab) ''''''',''''''' psitbx_str ''''''')']); if liuqe_matlab==0 q_rho.dim{1} = sqrt(linspace(0,1,numel(q_rho.dim{1}))); end params_eff.data_request='psi_axis'; % psi_edge=0 with LIUQE psi_axis=gdat_tcv(shot,params_eff); % assume same dimensions, check. Note data dims can be different from dim{} when there is a problem with liuqe run if numel(phi_tor.data) ~= numel(q_rho.data) || numel(psi_axis.data) ~= numel(phi_tor.dim{2}) warning(['problems in gdat_tcv with ' data_request_eff ' with unexpected dimensions']) return; end % check time sizes since can happen problems with old liuqe runs if size(q_rho.data,2) ~= size(phi_tor.data,2) warning(['time sizes between q_rho and phi_tor do not match: ' num2str(size(q_rho.data,2)) ' and ' num2str(size(phi_tor.data,2))]); return end if size(q_rho.data,2) ~= length(psi_axis.data) psi_axis q_rho disp('q_rho.dim');q_rho.dim phi_tor disp('phi_tor.dim');phi_tor.dim disp(['WARNING: time sizes between q_rho and psi_axis do not match: ' num2str(size(q_rho.data,2)) ' and ' ... num2str(length(psi_axis.data))]); disp('WARNING: should have been caught, so probably q_rho.dim not the same as data(:,:) dims') disp('should run: >> liuqe_default_run_sequence(shot)') return end if size(q_rho.data,1) ~= size(phi_tor.data,1) warning(['radial sizes between q_rho and phi_tor do not match: ' num2str(size(q_rho.data,1)) ' and ' num2str(size(phi_tor.data,1))]); return end for it=1:size(q_rho.data,2) %if any(~isfinite(phi_tor.data(:,it))) ij=find(isfinite(q_rho.data(:,it))); if ~isempty(ij) && numel(ij)>5 [qfit,~,~,phi]=interpos(-43,q_rho.dim{1}(ij).^2,q_rho.data(ij,it),phi_tor.dim{1}.^2); phi = -1.* phi .* (-psi_axis.data(it)); if only_edge phi_tor.data(end,it) = phi(end); else phi_tor.data(:,it) = phi'; end end %end end end gdat_data.data = phi_tor.data; gdat_data.dim = phi_tor.dim; gdat_data.dimunits = phi_tor.dimunits; gdat_data.units = phi_tor.units; if (length(gdat_data.dim)>=mapping_for_tcv.gdat_timedim); gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; end if (length(gdat_data.dim)>0); gdat_data.x = gdat_data.dim{1}; end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'pprime', 'pprime_rho'} if liuqe_matlab==0 nodenameeff = ['tcv_eq("' liuqefortran2liuqematlab('pprime_rho',1,0) '",''' psitbx_str ''')']; tracetdi=tdi(nodenameeff); if ~isempty(tracetdi.dim) && length(tracetdi.dim)>=1 tracetdi.dim{1} = sqrt(tracetdi.dim{1}); % correct x-axis psi_norm to rhopol end tracetdi.data = tracetdi.data ./2 ./pi; % correct node assumption (same for liuqe_fortran and fbte) else nodenameeff = ['tcv_eq(''pprime_rho'',''' psitbx_str ''')']; tracetdi=tdi(nodenameeff); end gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; if ~isempty(gdat_data.dim) && length(gdat_data.dim)>=2 gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; gdat_data.x = gdat_data.dim{setdiff([1 2],mapping_for_tcv.gdat_timedim)}; end gdat_data.data_fullpath=nodenameeff; gdat_data.dimunits = tracetdi.dimunits; gdat_data.units = tracetdi.units; gdat_data.request_description = 'pprime=dp/dpsi'; case {'pressure', 'pressure_rho'} if liuqe_matlab==0 nodenameeff = ['tcv_eq("' liuqefortran2liuqematlab('p_rho',1,0) '",''' psitbx_str ''')']; tracetdi=tdi(nodenameeff); if ~isempty(tracetdi.dim) && length(tracetdi.dim)>=1 tracetdi.dim{1} = sqrt(tracetdi.dim{1}); % correct x-axis psi_norm to rhopol end tracetdi.data = tracetdi.data ./2 ./pi; % correct node assumption (same for liuqe_fortran and fbte) else nodenameeff = ['tcv_eq(''p_rho'',''' psitbx_str ''')']; tracetdi=tdi(nodenameeff); end gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; if ~isempty(gdat_data.dim) && length(gdat_data.dim)>=2 gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; gdat_data.x = gdat_data.dim{setdiff([1 2],mapping_for_tcv.gdat_timedim)}; end gdat_data.data_fullpath=nodenameeff; gdat_data.dimunits = tracetdi.dimunits; gdat_data.units = tracetdi.units; gdat_data.request_description = 'pressure'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'psi_edge'} % psi at edge, 0 by construction in Liuqe, thus not given % add surface_psi from surface_flux and d(surface_flux)/dt = vloop nodenameeff=['\results::psi_axis' substr_liuqe]; if liuqe_version_eff==-1 nodenameeff=[begstr 'q_psi' substr_liuqe]; end tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) || ~any(isfinite(tracetdi.data)) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end gdat_data.data = tracetdi.data.*0; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{1}; gdat_data.data_fullpath=[' zero ']; gdat_data.dimunits = tracetdi.dimunits; gdat_data.units = tracetdi.units; gdat_data.request_description = '0 since LIUQE construct psi to be zero at LCFS'; % params_eff.data_request='\results::surface_flux'; surface_psi=gdat_tcv([],params_eff); ij=[isfinite(surface_psi.data)]; [aa,vsurf] = interpos(63,surface_psi.t(ij),surface_psi.data(ij),-3); gdat_data.surface_psi = surface_psi.data; gdat_data.vsurf = vsurf; gdat_data.vsurf_description = ['time derivative from surface_psi, obtained from \results::surface_flux']; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'r_contour_edge', 'z_contour_edge'} if liuqe_matlab==0 nodenameeff=['\results::' data_request_eff(1) '_contour' substr_liuqe]; % npts_contour = tdi(['\results::npts_contour' substr_liuqe]); tracetdi=tdi(nodenameeff); gdat_data.request_description = 'NaNs when smaller nb of boundary points at given time, can use \results::npts_contour'; else nodenameeff = ['tcv_eq(''' data_request_eff(1) '_edge'',''LIUQE.M' substr_liuqe_tcv_eq ''')']; tracetdi=tdi(nodenameeff); gdat_data.request_description = 'lcfs on same nb of points for all times'; end gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; gdat_data.data_fullpath=nodenameeff; gdat_data.dimunits = tracetdi.dimunits; gdat_data.units = tracetdi.units; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'rhotor_edge', 'rhotor', 'rhotor_norm'} % Phi(LCFS) = int(Bphi dSphi), can use Eq.(11) of "Tokamak coordinate conventions: COCOS" paper: % O. Sauter, S.Yu. Medvedev, Comput. Phys. Commun. 184 (2013) 293–302 % since cocos=17 for LIUQE we get: % q = -dPhi/dpsi => Phi = - int(q*dpsi) which should always have the sign of B0 % need to get q_rho but to avoid loop for rhotor in grids_1d, get q_rho explicitely here params_eff = gdat_data.gdat_params; if liuqe_matlab==0 nodenameeff=['tcv_eq(''q_psi'',''LIUQE' substr_liuqe_tcv_eq ''')']; if liuqe_version_eff==-1 nodenameeff=[begstr 'q_psi' substr_liuqe]; end q_rho=tdi(nodenameeff); if isempty(q_rho.data) || isempty(q_rho.dim) % || ischar(q_rho.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for q_rho for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end rhopol_eff = ones(size(q_rho.dim{1})); rhopol_eff(:) = sqrt(linspace(0,1,length(q_rho.dim{1}))); q_rho.dim{1} = rhopol_eff; params_eff.data_request='psi_axis'; % psi_edge=0 with LIUQE psi_axis=gdat_tcv(shot,params_eff); params_eff.data_request='b0'; b0=gdat_tcv(shot,params_eff); b0tpsi = interp1(b0.t,b0.data,psi_axis.t); %q_rho on same time base as psi_axis if isempty(psi_axis.data) || isempty(psi_axis.dim) || isempty(q_rho.data) || isempty(q_rho.dim) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end return end rhoequal = linspace(0,1,length(q_rho.dim{1})); if strcmp(data_request_eff,'rhotor_edge') gdat_data.data = psi_axis.data; % to have the dimensions correct gdat_data.dim = psi_axis.dim; gdat_data.t = gdat_data.dim{1}; gdat_data.data_fullpath='phi from q_rho, psi_axis and integral(-q dpsi)'; gdat_data.units = 'T m^2'; gdat_data.dimunits{1} = 's'; elseif strcmp(data_request_eff,'rhotor_norm') || strcmp(data_request_eff,'rhotor') gdat_data.data = q_rho.data; % to have the dimensions correct gdat_data.dim{1} = ones(size(q_rho.dim{1})); gdat_data.dim{1}(:) = rhoequal; gdat_data.dim{2} = q_rho.dim{2}; gdat_data.t = gdat_data.dim{2}; if strcmp(data_request_eff,'rhotor_norm') gdat_data.data_fullpath='sqrt(phitor/phitor_edge), rhotor_edge=sqrt(phitor(1)/B0/pi)'; else gdat_data.data_fullpath='sqrt(phitor/pi/B0), rhotor_edge=sqrt(phitor(1)/B0/pi)'; end gdat_data.units = ''; gdat_data.dimunits{1} = 'rhopol\_norm'; gdat_data.dimunits{2} = 's'; end gdat_data.x=gdat_data.dim{1}; gdat_data.psi_axis = reshape(psi_axis.data,length(psi_axis.data),1); if length(gdat_data.psi_axis) ~= length(gdat_data.t) disp('problems of time between qrho and psi_axis?') return end gdat_data.b0 = b0tpsi; for it=1:size(q_rho.data,2) ij=find(isfinite(q_rho.data(:,it))); if ~isempty(ij) [qfit,~,~,phi]=interpos(-43,q_rho.dim{1}(ij).^2,q_rho.data(ij,it),rhoequal.^2); dataeff = sqrt(phi .* psi_axis.data(it) ./ b0tpsi(it) ./ pi) ; % Delta_psi = -psi_axis else dataeff = NaN; end gdat_data.rhotor_edge(it) = dataeff(end); % redundant with "rhotor_edge" but to always have all subfields if strcmp(data_request_eff,'rhotor_edge') gdat_data.data(it) = dataeff(end); elseif strcmp(data_request_eff,'rhotor_norm') gdat_data.data(:,it) = dataeff./dataeff(end); elseif strcmp(data_request_eff,'rhotor') gdat_data.data(:,it) = dataeff; else disp(['problem in gdat_tcv rhotor with unknown data_request_eff = ' data_request_eff]); return end end gdat_data.rhotor_edge = gdat_data.rhotor_edge'; else params_eff = gdat_data.gdat_params; params_eff.data_request='phi_tor'; phi_tor=gdat_tcv([],params_eff); params_eff = gdat_data.gdat_params; params_eff.data_request='b0'; b0=gdat_tcv([],params_eff); gdat_data.t = phi_tor.t; ij=find(isfinite(b0.data)); if length(gdat_data.t) > 0 gdat_data.b0 = interpos(b0.t(ij),b0.data(ij),gdat_data.t); % always provide rhotor_edge so field always exists gdat_data.rhotor_edge = sqrt(phi_tor.data(end,:)./pi./reshape(gdat_data.b0,1,numel(gdat_data.b0)))'; if strcmp(data_request_eff,'rhotor_edge') gdat_data.data = gdat_data.rhotor_edge; gdat_data.dim = phi_tor.dim(2); % while there is a problem with \tcv_shot::top.results.equil... dim nodes gdat_data.dimunits = phi_tor.dimunits{2}; gdat_data.units = 'm'; gdat_data.data_fullpath=['rhotor_edge=sqrt(Phi(edge)/pi/B0) from phi_tor']; elseif strcmp(data_request_eff,'rhotor_norm') gdat_data.data = sqrt(phi_tor.data./(ones(size(phi_tor.data,1),1)*reshape(phi_tor.data(end,:),1,size(phi_tor.data,2)))); gdat_data.dim = phi_tor.dim; % while there is a problem with \tcv_shot::top.results.equil... dim nodes gdat_data.x=gdat_data.dim{1}; gdat_data.units = ''; gdat_data.dimunits = phi_tor.dimunits; gdat_data.data_fullpath=['rhotor_norm=sqrt(Phi/Phi(edge)) from phi_tor']; elseif strcmp(data_request_eff,'rhotor') gdat_data.data = sqrt(phi_tor.data./pi./(ones(size(phi_tor.data,1),1)*reshape(gdat_data.b0,1,numel(gdat_data.b0)))); gdat_data.dim = phi_tor.dim; % while there is a problem with \tcv_shot::top.results.equil... dim nodes gdat_data.x=gdat_data.dim{1}; gdat_data.units = 'm'; gdat_data.dimunits = phi_tor.dimunits; gdat_data.data_fullpath=['rhotor=sqrt(Phi/pi/B0) from phi_tor']; else disp(['data_request_eff = ' data_request_eff ' not defined within rhotor block in gdat_tcv.m']); return end else gdat_data.b0 = []; gdat_data.rhotor_edge = []; end end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'rhovol','rho_vol','volume_rho','volume'} if strcmp(data_request_eff,'rho_vol'); data_request_eff = 'rhovol'; end % volume_rho = vol(rho); volume = vol(LCFS) = vol(rho=1); % rhovol = sqrt(vol(rho)/vol(rho=1)); if liuqe_matlab==0 nodenameeff=['\results::psitbx:vol']; if liuqe_version_eff > 1 disp('needs to construct volume'); return end else nodenameeff=['tcv_eq(''vol'',''' psitbx_str ''')']; end if liuqe_version_eff==-1 data_request_eff = 'volume'; % only LCFS nodenameeff=[begstr 'volume' substr_liuqe]; end tracetdi=tdi(nodenameeff); if (isempty(tracetdi.data) || isempty(tracetdi.dim)) && liuqe_matlab==0 % try to run psitbxput psitbxput_version = 1.3; psitbxput(psitbxput_version,shot); ishot = mdsopen(shot); tracetdi=tdi(nodenameeff); end if isempty(tracetdi.data) || isempty(tracetdi.dim) || ischar(tracetdi.data) return end gdat_data.units = tracetdi.units; if strcmp(data_request_eff,'volume') if length(gdat_data.dim >=2) gdat_data.data = tracetdi.data(end,:); gdat_data.volume_edge = gdat_data.data; gdat_data.dim{1} = tracetdi.dim{2}; gdat_data.dimunits{1} = tracetdi.dimunits{2}; else mapping_for_tcv.gdat_timedim = 1; gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; gdat_data.dimunits = tracetdi.dimunits; gdat_data.volume_edge = gdat_data.data; end gdat_data.request_description = 'volume(LCFS)=volume(rhopol=1)'; gdat_data.data_fullpath=['Volume of LCFS from ' nodenameeff]; else gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; if length(gdat_data.dim)>0; gdat_data.x = gdat_data.dim{1}; end gdat_data.dimunits = tracetdi.dimunits; % to always have field volume_edge gdat_data.volume_edge = gdat_data.data(end,:); if strcmp(data_request_eff,'volume_rho') gdat_data.request_description = 'volume(rho)'; gdat_data.data_fullpath=['Volume(rho) from ' nodenameeff]; elseif strcmp(data_request_eff,'rhovol') gdat_data.data = sqrt(gdat_data.data./repmat(reshape(gdat_data.volume_edge,1,size(gdat_data.data,2)),size(gdat_data.data,1),1)); gdat_data.data_fullpath=['sqrt(volume/volume(edge) from ' nodenameeff]; gdat_data.request_description = 'sqrt(volume(rho)/volume(edge))'; else if (gdat_params.nverbose>=1) disp(['should not be here in vol cases with data_request = ' data_request_eff]); end return end end gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'rtc'} % load all real-time memory signals for various nodes %Get the data from mds and fill the data structure defined by %define_simulink_signals % If the rtccode/developemnet folder is not in your path % read from default or Carpanese's folder ( he might have not % updated the folder to the last version) aaa=which('take_all_signals'); if isempty(aaa) if exist('/home/sauter/TCV/rtc_tools_io_defs_crpptbx') addpath('/home/sauter/TCV/rtc_tools_io_defs_crpptbx','-end'); elseif exist('~/rtccode/development/tools/io_defs') addpath('~/rtccode/development/tools/io_defs','-end'); else addpath('/home/carpanes/rtccode/development/tools/io_defs','-end'); end end sources_avail = {'defined', 'all', 'adcs'}; %Check if varargins match source_avail if ~isfield(gdat_data.gdat_params,'source') || isempty(gdat_data.gdat_params.source) % with no specifications all, defined, combined are taken gdat_data.gdat_params.source = sources_avail(1:2); elseif ~iscell(gdat_data.gdat_params.source) if ischar(gdat_data.gdat_params.source) gdat_data.gdat_params.source = lower(gdat_data.gdat_params.source); if ~any(strmatch(gdat_data.gdat_params.source,lower(sources_avail))) if (gdat_params.nverbose>=1) warning(['source= ' gdat_data.gdat_params.source ' is not part of the available sources: ' sprintf('''%s'' ',sources_avail{:})]); end return else gdat_data.gdat_params.source = {lower(gdat_data.gdat_params.source)}; end else if (gdat_params.nverbose>=1); warning([' source parameter not compatible with: ' sprintf('''%s'' ',sources_avail{:})]); end return end else tmp = {}; for i=1:length(gdat_data.gdat_params.source) gdat_data.gdat_params.source{i} = lower(gdat_data.gdat_params.source{i}); %put vargin in params if ~any(strmatch(gdat_data.gdat_params.source{i},lower(sources_avail))) if gdat_data.gdat_params.nverbose>=1 warning(['source = ' gdat_data.gdat_params.source{i} ' not expected with data_request= ' data_request_eff]) end else tmp{end+1} = gdat_data.gdat_params.source{i}; end end gdat_data.gdat_params.source = tmp; end if isfield(gdat_data.gdat_params,'max_adcs') zshift = gdat_data.gdat_params.max_adcs; else gdat_data.gdat_params.max_adcs = []; end % Get data for the source requested for isource=1:numel(gdat_data.gdat_params.source) switch gdat_data.gdat_params.source{isource} case 'adcs' [DS, DSraw] = take_all_adcs(shot,gdat_data.gdat_params.max_adcs); gdat_data.adcs = DSraw; gdat_data.adcs_grouped = DS; mdsclose; mdsdisconnect; mdsopen(shot); case 'defined' DS = take_all_signals(shot); %Read from mds SDS_DS = define_simulink_signals(DS); %Put them in predifined structure % Add the .data and .t structure % there was a conflict with r 7471 for ii=1:numel(SDS_DS) %iter over node node = ii; for jj=1:numel(SDS_DS{ii}) %iter over threads thread = jj; if ~isempty(SDS_DS{ii}{jj}) fieldnameslist = fieldnames(SDS_DS{ii}{jj}); if SDS_DS{ii}{jj}.conf.hasthreads is_with_threads = 1; else is_with_threads = 0; end for kk=2:numel(fieldnameslist) %iter over fieldnames (the first one is configuration) indices = SDS_DS{ii}{jj}.(fieldnameslist{kk}).ind; SDS_DS{ii}{jj}.(fieldnameslist{kk}).data = []; for zz=1:numel(indices) %iter over indices ind = indices(zz); mdsconnect('scd'); mdsopen('rtc', shot); % data expression if is_with_threads ==0 expression = sprintf('\\top.crpprt%.2d.mems.mem_%.2d',node,ind); else expression = sprintf('\\top.crpprt%.2d.thread%.1d.mems.mem_%.3d',node,thread,ind); end tmp = tdi(expression); if isnumeric(tmp.data) && ~isempty(tmp.data) SDS_DS{ii}{jj}.(fieldnameslist{kk}).data =[SDS_DS{ii}{jj}.(fieldnameslist{kk}).data; tmp.data']; SDS_DS{ii}{jj}.(fieldnameslist{kk}).t = tmp.dim{1}; else fprintf('Warning node: %d thread: %d signal: %s ind %d not available\n', ii,jj,fieldnameslist{kk}, zz ); end end end end end end gdat_data.rtc_defined = SDS_DS; mdsclose; mdsdisconnect; case 'all' mdsconnect('scd'); mdsopen('rtc', shot); %[node, threads, #number of signals for each thread of the node] global_node_thread_signals = ... [1,1,32; 2,1,32; 3,4,256; 6,4,256; 7,4,256; 8,4,256]; % Default signals initialization AS = init_all_signals(global_node_thread_signals); % Put signals in standard data strucure (SDS) SDS_AS = define_simulink_signals(AS); % Add the .data and .t structure for ii=1:numel(SDS_AS) %iter over node node = ii; for jj=1:numel(SDS_AS{ii}) %iter over threads thread = jj; if ~isempty(SDS_AS{ii}{jj}) fieldnameslist = fieldnames(SDS_AS{ii}{jj}); if numel(SDS_AS{ii})>1 is_with_threads = 1; else is_with_threads = 0; end for kk=2:numel(fieldnameslist) %iter over fieldnames (the first one is configuration) indices = SDS_AS{ii}{jj}.(fieldnameslist{kk}).ind; SDS_AS{ii}{jj}.(fieldnameslist{kk}).data = []; for zz=1:numel(indices) %iter over indices ind = indices(zz); % data expression if is_with_threads ==0 expression = sprintf('\\top.crpprt%.2d.mems.mem_%.2d',node,ind); else expression = sprintf('\\top.crpprt%.2d.thread%.1d.mems.mem_%.3d',node,thread,ind); end tmp = tdi(expression); if isnumeric(tmp.data) SDS_AS{ii}{jj}.(fieldnameslist{kk}).data =[SDS_AS{ii}{jj}.(fieldnameslist{kk}).data; tmp.data']; SDS_AS{ii}{jj}.(fieldnameslist{kk}).t = tmp.dim{1}; else if gdat_params.nverbose>=3 fprintf('Warning node: %d thread: %d signal: %s ind %d not available\n', ii,jj,fieldnameslist{kk},zz); end end end end end end end gdat_data.rtc_all = SDS_AS; mdsclose; mdsdisconnect; otherwise %to be added in case end end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'sxr', 'mpx'} if strcmp(data_request_eff,'mpx') data_request_eff = 'mpx'; % mpx chosen through parameter 'source' within 'sxr' gdat_data.data_request = data_request_eff; gdat_data.gdat_params.source = 'mpx'; end % sxr from dmpx by default or xtomo if 'camera','xtomo' is provided if ~isfield(gdat_data.gdat_params,'source') || isempty(gdat_data.gdat_params.source) gdat_data.gdat_params.source = 'mpx'; elseif ~strcmp(lower(gdat_data.gdat_params.source),'xtomo') && ~strcmp(lower(gdat_data.gdat_params.source),'mpx') if gdat_data.gdat_params.nverbose>=1 warning(['source = ' gdat_data.gdat_params.source ' not expected with data_request= ' data_request_eff]) end return end if ~isfield(gdat_data.gdat_params,'time_interval') gdat_data.gdat_params.time_interval = []; end if ~isfield(gdat_data.gdat_params,'freq') gdat_data.gdat_params.freq = 'slow'; end switch lower(gdat_data.gdat_params.source) case {'mpx', 'dmpx'} gdat_data.gdat_params.source = 'mpx'; if ~isfield(gdat_data.gdat_params,'camera') || isempty(gdat_data.gdat_params.camera) gdat_data.gdat_params.camera = 'top'; else gdat_data.gdat_params.camera = lower(gdat_data.gdat_params.camera); end if ~any(liuqe_version_eff==[1, 2, 3]) if gdat_data.gdat_params.nverbose>=3 disp(['liuqe_version = ' liuqe_version ' not supported for data_request= ' data_request_eff]); end return end freq_opt = 0; if strcmp(gdat_data.gdat_params.freq,'fast'); freq_opt = 1; end t_int = [0 10]; % starts from 0 otherwise mpxdata gives data from t<0 if ~isempty(gdat_data.gdat_params.time_interval); t_int = gdat_data.gdat_params.time_interval; end gdat_data.top.data = []; gdat_data.top.x = []; gdat_data.top.channel = []; gdat_data.bottom.data = []; gdat_data.bottom.x = []; gdat_data.bottom.channel = []; try mpx = mpxdata(shot,'svgr','freq',freq_opt,'liuqe',liuqe_version_eff,'detec',gdat_data.gdat_params.camera, ... 'time',t_int); catch if gdat_data.gdat_params.nverbose>=1 warning('problem with mpxdata') end return end gdat_data.units = {'au'}; % not known at this stage gdat_data.dimunits = {'', 's'}; gdat_data.data_fullpath = ['using mpxdata(' num2str(shot) ',''svgr'') with params in gdat_data.gdat_params']; if ~strcmp(gdat_data.gdat_params.camera,'both') % invert index of time and channel (rho) gdat_data.data = mpx.(gdat_data.gdat_params.camera(1:3)).signal.data'; gdat_data.t = mpx.(gdat_data.gdat_params.camera(1:3)).signal.dim{1}; gdat_data.dim{1} = interp1(mpx.top.rho.time,mpx.top.rho.rhopsi,gdat_data.t)'; gdat_data.dim{2} = mpx.(gdat_data.gdat_params.camera(1:3)).signal.dim{1}; gdat_data.x = gdat_data.dim{1}; gdat_data.(gdat_data.gdat_params.camera).data = gdat_data.data; gdat_data.(gdat_data.gdat_params.camera).x = gdat_data.x; gdat_data.(gdat_data.gdat_params.camera).channel = mpx.(gdat_data.gdat_params.camera(1:3)).signal.dim{2}; gdat_data.data_fullpath = ['MPX for ' gdat_data.gdat_params.camera ' camera in .data, "rho" in .x between [-1,1]' ... char(10) gdat_data.data_fullpath]; else gdat_data.data = mpx.signal.data'; gdat_data.t = mpx.signal.dim{1}; gdat_data.dim{1} = interp1(mpx.top.rho.time,mpx.top.rho.rhopsi,gdat_data.t); gdat_data.dim{2} = mpx.(gdat_data.gdat_params.camera(1:3)).signal.dim{1}; % gdat_data.top.data = mpx.top.signal.data'; gdat_data.top.x = gdat_data.dim{1}; gdat_data.top.channel = mpx.top.signal.dim{2}; gdat_data.bottom.data = mpx.bot.signal.data; gdat_data.bottom.x = interp1(mpx.bot.rho.time,mpx.bot.rho.rhopsi,gdat_data.t); gdat_data.bottom.channel = mpx.bottom.signal.dim{2}; gdat_data.(gdat_data.gdat_params.camera).channel = mpx.(gdat_data.gdat_params.camera(1:3)).signal.dim{2}; gdat_data.data_fullpath = ['MPX for ' gdat_data.gdat_params.camera ' camera in .data, "rho" in .x between [-1,1]' ... char(10) gdat_data.data_fullpath]; gdat_data.x = gdat_data.dim{1}; end case 'xtomo' % so far allow string and array as 'camera' choices: % camera = [] (default, thus get XTOMOGetData defaults), 'central', [3 6] (camera numbers) camera_xtomo = []; channel_xtomo = []; if ~isfield(gdat_data.gdat_params,'camera') || isempty(gdat_data.gdat_params.camera) gdat_data.gdat_params.camera = []; elseif isnumeric(gdat_data.gdat_params.camera) if length(gdat_data.gdat_params.camera) > 10 if gdat_data.gdat_params.nverbose>=1; warning('max number of camera is 10 for XTOMO'); end gdat_data.gdat_params.camera = gdat_data.gdat_params.camera(1:10); end camera_xtomo = zeros(1,10); camera_xtomo(gdat_data.gdat_params.camera) = 1; elseif ischar(gdat_data.gdat_params.camera) gdat_data.gdat_params.camera = lower(gdat_data.gdat_params.camera); if strcmp(gdat_data.gdat_params.camera,'central') camera_xtomo = zeros(1,10); icam = 3 camera_xtomo(icam) = 1; channel_xtomo = (icam-1)*20 + 9; end else if gdat_data.gdat_params.nverbose>=3; disp(['camera = ' gdat_data.gdat_params.camera ' not implemented']); end gdat_data.gdat_params.camera = []; end try if isempty(gdat_data.gdat_params.time_interval); [sig,t,Sat_channel,cat_default] = XTOMOGetData(shot,0,4,camera_xtomo,[]); else [sig,t,Sat_channel,cat_default] = XTOMOGetData(shot,gdat_data.gdat_params.time_interval(1), ... gdat_data.gdat_params.time_interval(2),camera_xtomo,[]); end catch if gdat_data.gdat_params.nverbose>=1 warning('problem with XTOMOGetData, no data') end return end gdat_data.t = t; gdat_data.units = 'au'; gdat_data.xtomo.extra_params = cat_default; gdat_data.xtomo.saturated_channels = Sat_channel; gdat_data.data_fullpath = ['using XTOMOGetData(' num2str(shot) ') with some additional params from gdat_data.gdat_params']; if isempty(channel_xtomo) % provide all chords gdat_data.data = sig; gdat_data.x = [1:size(sig,1)]; gdat_data.dimunits = {'20 chords per camera'; 's'}; else keyboard % extract only given channels gdat_data.data = sig(channel_xtomo,:); gdat_data.x = channel_xtomo; gdat_data.dimunits = {'chords where floor(dim{1}/10) gives camera nb and mod(dim{1},10) chord nb'; 's'}; end gdat_data.dim = {gdat_data.x; gdat_data.t}; otherwise if gdat_data.gdat_params.nverbose>=1 warning(['camera = ' gdat_data.gdat_params.camera ' not expected with data_request= ' data_request_eff]) end return end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'ttprime', 'ttprime_rho'} if liuqe_matlab==0 nodenameeff = ['tcv_eq("' liuqefortran2liuqematlab('ttprime_rho',1,0) '",''' psitbx_str ''')']; tracetdi=tdi(nodenameeff); if ~isempty(tracetdi.dim) && length(tracetdi.dim)>=1 tracetdi.dim{1} = sqrt(tracetdi.dim{1}); % correct x-axis psi_norm to rhopol end tracetdi.data = tracetdi.data ./2 ./pi; % correct node assumption (same for liuqe_fortran and fbte) else nodenameeff = ['tcv_eq(''ttprime_rho'',''' psitbx_str ''')']; tracetdi=tdi(nodenameeff); end gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; if ~isempty(gdat_data.dim) && length(gdat_data.dim)>=2 gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; gdat_data.x = gdat_data.dim{setdiff([1 2],mapping_for_tcv.gdat_timedim)}; end gdat_data.data_fullpath=nodenameeff; gdat_data.dimunits = tracetdi.dimunits; gdat_data.units = tracetdi.units; gdat_data.request_description = 'ttprime=t*dt/dpsi'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'profnerho','profterho'} % for backward compatibility but corresponds to ne_rho with param.fit_type='auto' (TCV special) % nodenameeff=['\results::THOMSON.PROFILES.AUTO:' data_request_eff(5:6)]; nodenameeff_vers = [nodenameeff ':version_num']; avers = tdi(nodenameeff_vers); if avers.data==0 % may be because nodes not yet filled in, so call once a node ab=tdi(nodenameeff); avers = tdi(nodenameeff_vers); end if avers.data>0 tracetdi=tdi(nodenameeff); if avers.data < 2.99 % for earlier version the bug made it to have logically (rho,t) gdat_data.data=tracetdi.data; if ~isempty(tracetdi.dim) && ~ischar(tracetdi.data) gdat_data.x=tracetdi.dim{1}; gdat_data.t=tracetdi.dim{2}; error_status=0; else error_status=2; gdat_data.x=[]; gdat_data.t=[]; end else gdat_data.data=tracetdi.data'; % error in dimensions for autofits if ~isempty(tracetdi.dim) && ~ischar(tracetdi.data) if gdat_params.nverbose>=3; disp('assumes dim{2} for x in THOMSON.PROFILES.AUTO'); end gdat_data.x=tracetdi.dim{2}; gdat_data.t=tracetdi.dim{1}; error_status=0; else gdat_data.x=[]; gdat_data.t=[]; error_status=2; end end else tracetdi=avers; gdat_data.x=[]; gdat_data.t=[]; end gdat_data.dim=[{gdat_data.x};{gdat_data.t}]; gdat_data.dimunits=[{'sqrt(psi\_norm)'} ; {'time [s]'}]; if ~isempty(gdat_data.t) && any(strcmp(fieldnames(tracetdi),'units')) gdat_data.units=tracetdi.units; end gdat_data.request_description = 'quick autofits within thomson nodes, using version'; gdat_data.fullpath = ['Thomson autfits from ' nodenameeff]; otherwise if (gdat_params.nverbose>=1); warning(['switchcase= ' data_request_eff ' not known in gdat_tcv']); end error_status=901; return end else if (gdat_params.nverbose>=1); warning(['TCV method=' mapping_for_tcv.method ' not known yet, contact Olivier.Sauter@epfl.ch']); end error_status=602; return end %if ishot==shot; mdsclose; end gdat_data.gdat_params.help = tcv_help_parameters(fieldnames(gdat_data.gdat_params)); gdat_data.mapping_for.tcv = mapping_for_tcv; gdat_params = gdat_data.gdat_params; error_status=0; return %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function [firthomratio] = get_fir_thom_rat_data(shot,maintracename,timebase,nverbose); % % since depends on shot number for using auto fit and thomson or thomson edge, use tracename and function here % % maintracename = 'thomson' or 'thomson_edge % % return fir_to_thomson ratio on time=timebase % % normally should use "main" thomson one built from auto fit if possible % take edge one if need be % % default: maintracename = "thomson" % maintracename_eff = 'thomson'; if exist('maintracename') && ~isempty(maintracename) maintracename_eff = maintracename; end firthomratio = NaN; if ~exist('timebase') || isempty(timebase) if (nverbose>=1) disp('need a timebase in get_fir_thom_rat_data') end return end firthomratio = NaN*ones(size(timebase)); if strcmp(maintracename_eff,'thomson') if shot>=23801 tracefirrat=tdi('\results::thomson.profiles.auto:fir_thom_rat'); %time base not same!! if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson.profiles.auto:fir_thom_rat: empty, use thomson:fir_thom_rat'); end tracefirrat=tdi('\results::thomson:fir_thom_rat'); end else tracefirrat=tdi('\results::thomson:fir_thom_rat'); if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson:fir_thom_rat: empty'); end end end elseif strcmp(maintracename_eff,'thomson_edge') if shot>=23801 tracefirrat=tdi('\results::thomson.profiles.auto:fir_thom_rat'); %time base not same!! if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson.profiles.auto:fir_thom_rat: empty, use thomson:fir_thom_rat'); end tracefirrat=tdi('\results::thomson:fir_thom_rat'); end else tracefirrat=tdi('\results::thomson_edge:fir_thom_rat'); if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson_edge:fir_thom_rat: empty'); end end end else if (nverbose>=1); disp('bad input in get_fir_thom_rat_data'); end return end if ~isempty(tracefirrat.data) && ~ischar(tracefirrat.data) && any(isfinite(tracefirrat.data)) ... && ~isempty(tracefirrat.dim) && ~isempty(tracefirrat.dim{1}) firthomratio = interp1(tracefirrat.dim{1},tracefirrat.data,timebase); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function [gdat_data] = get_thomson_raw_data(shot,data_request_eff,gdat_data,doedge,nverbose); % try time=mdsdata('\results::thomson:times'); catch gdat_data.error_bar = []; if strcmp(data_request_eff(1:2),'ne') tracefirrat_data = []; gdat_data.firrat=tracefirrat_data; gdat_data.data_raw = gdat_data.data; gdat_data.error_bar_raw = gdat_data.error_bar; end if (nverbose>=1) && shot<100000 warning('Problems with \results::thomson:times') warning(['!!!!!!!!!!!!!!!!!!!!!!!!! cannot continue with ' data_request_eff]) end return end if isempty(time) || ischar(time) thomsontimes=time; if (nverbose>=1) && shot<100000 warning('!!!!!!!!!!!!!!!!!!!!!!!!!\results::thomson:times is empty? Check') disp(['!!!!!!!!!!!!!!!!!!!!!!!!! cannot continue with ' data_request_eff]) end return end edge_str_ = ''; edge_str_dot = ''; if doedge edge_str_ = '_edge'; edge_str_dot = '.edge'; end nodenameeff = ['\results::thomson' edge_str_dot ':' data_request_eff(1:2)]; tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || ischar(tracetdi.data) || isempty(tracetdi.dim) gdat_data.error_bar = []; gdat_data.firrat = []; gdat_data.data_raw = []; gdat_data.error_bar_raw = []; return end gdat_data.data=tracetdi.data'; % Thomson data as (t,z) tracestd=tdi(['\results::thomson' edge_str_dot ':' data_request_eff(1:2) ':error_bar']); gdat_data.error_bar=tracestd.data'; gdat_data.data_fullpath=[nodenameeff '; error_bar']; % add fir if ne requested if strcmp(data_request_eff(1:2),'ne') tracefirrat_data = get_fir_thom_rat_data(shot,['thomson' edge_str_],time,nverbose); gdat_data.firrat=tracefirrat_data; gdat_data.data_raw = gdat_data.data; gdat_data.data = gdat_data.data_raw * diag(tracefirrat_data); gdat_data.error_bar_raw = gdat_data.error_bar; gdat_data.error_bar = gdat_data.error_bar_raw * diag(tracefirrat_data); gdat_data.data_fullpath=[gdat_data.data_fullpath '; fir_thom_rat ; _raw without firrat']; ij=find(isfinite(tracefirrat_data)); if isempty(ij) gdat_data.data_fullpath=[gdat_data.data_fullpath ' WARNING use ne_raw since firrat has NaNs thus ne=NaNs; fir_thom_rat ; _raw without firrat']; disp('***********************************************************************') disp('WARNING: ne from Thomson has fir_thom_rat with Nans so only ne_raw can be used'); disp('***********************************************************************') end end z=mdsdata(['\diagz::thomson_set_up' edge_str_dot ':vertical_pos']); gdat_data.dim=[{z};{time}]; gdat_data.dimunits=[{'Z [m]'} ; {'time [s]'}]; gdat_data.x=z; gdat_data.t=time; % isfield does not work since tracetdi is not a 'struct' but a tdi object, thus use fieldnames if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.units=tracetdi.units; end