function [gdat_data,gdat_params,error_status,varargout] = gdat_tcv(shot,data_request,varargin) % % function [gdat_data,gdat_params,error_status,varargout] = gdat(shot,data_request,varargin) % % Aim: get data from a given machine using full path or keywords. % data_request are and should be case independent (transformed in lower case in the function and outputs) % % If no inputs are provided, return the list of available pre-defined data_request in gdat_data and default parameters gdat_params % % Inputs: % % no inputs: return default parameters in a structure form in gdat_params % shot: shot number % data_request: keyword (like 'ip') or trace name or structure containing all parameters but shot number % varargin{i},varargin{i+1},i=1:nargin-2: additional optional parameters given in pairs: param_name, param_value % The optional parameters list might depend on the data_request % examples of optional parameters: % 'plot',1 (plot is set by default to 0) % 'machine','TCV' (the default machine is the local machine) % % % Outputs: % % gdat_data: structure containing the data, the time trace if known and other useful information % gdat_data.t : time trace % gdat_data.data: requested data values % gdat_data.dim : values of the various coordinates related to the dimensions of .data(:,:,...) % note that one of the dim is the time, replicated in .t for clarity % gdat_data.dimunits : units of the various dimensions, 'dimensionless' if dimensionless % gdat_data.error_bar : if provided % gdat_data.gdat_call : list of parameters provided in the gdat call (so can be reproduced) % gdat_data.shot: shot number % gdat_data.machine: machine providing the data % gdat_data.gdat_request: keyword for gdat if relevant % gdat_data.data_fullpath: full path to the data node if known and relevant, or relevant expression called if relevant % gdat_data.gdat_params: copy gdat_params for completeness (gdat_params contains a .help structure detailing each parameter) % gdat_data.xxx: any other relevant information % % gdat_params contains the options relevant for the called data_request. It also contains a help structure for each option % eg.: param1 in gdat_params.param1 and help in gdat_params.help.param1 % % Examples: % (should add working examples for various machines (provides working shot numbers for each machine...)) % % [a1,a2]=gdat; % a2.data_request = 'Ip'; % a3=gdat(48836,a2); % gives input parameters as a structure, allows to call the same for many shots % a4=gdat('opt1',123,'opt2',[1 2 3],'shot',48832,'data_request','Ip','opt3','aAdB'); % all in pairs % a5=gdat(48836,'ip'); % standard call % a6=gdat(48836,'ip','Opt1',123,'Doplot',1,'opt2','Abc'); % standard call with a few options (note all lowercase in output) % % Comments for local developer: % This gdat is just a "header routine" calling the gdat for the specific machine gdat_`machine`.m which can be called % directly, thus which should be able to treat the same type of input arguments % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Prepare some variables, etc varargout{1}=cell(1,1); error_status=1; % construct default parameters structure gdat_params.data_request = ''; default_machine = 'tcv'; gdat_params.machine=default_machine; gdat_params.doplot = 0; gdat_params.liuqe = 1; gdat_params.nverbose = 1; % construct list of keywords from global set of keywords and specific TCV set % get data_request names from centralized table data_request_names = get_data_request_names; % add TCV specific to all: if ~isempty(data_request_names.tcv) tcv_names = fieldnames(data_request_names.tcv); for i=1:length(tcv_names) data_request_names.all.(tcv_names{i}) = data_request_names.tcv.(tcv_names{i}); end end data_request_names_all = fieldnames(data_request_names.all); % $$$ data_request_names_all= [{'ip'} {'b0'} {'zmag'} {'rmag'} {'rcont'} {'zcont'} {'vol'} {'rhovol'} {'qrho'} {'q95'} {'kappa'} ... % $$$ {'delta'} {'deltatop'} {'deltabot'} {'neint'} {'nel'} ... % $$$ {'ne'} {'te'} {'nerho'} {'terho'} {'ne_edge'} {'te_edge'} {'nerho_edge'} {'terho_edge'} {'nerhozshift'} {'terhozshift'} {'profnerho'} {'profterho'} ... % $$$ {'neft'} {'teft'} {'neftav'} {'teftav'} {'neft:trial'} {'teft:trial'} {'neftav:trial'} {'teftav:trial'} ... % $$$ {'sxr'} {'sxr'} {'ece'} {'mpx'} {'ioh'} {'vloop'} {'pgyro'} {'jtor'} {'vi_tor'} {'vi_torfit'} {'vi_pol'} {'vi_polfit'} {'ti'} {'tifit'} {'ni'} {'nifit'} {'zeffcxrs'} {'zeffcxrsfit'}]; % construct default output structure gdat_data.data = []; gdat_data.units = []; gdat_data.dim = []; gdat_data.dimunits = []; gdat_data.t = []; gdat_data.x = []; gdat_data.shot = []; gdat_data.gdat_request = []; gdat_data.gdat_params = gdat_params; gdat_data.data_fullpath = []; % Treat inputs: ivarargin_first_char = 3; data_request_eff = ''; if nargin>=2 && ischar(data_request); data_request = lower(data_request); end gdat_data.gdat_request = data_request_names_all; % so if return early gives list of possible request names gdat_data.gdat_params.help = tcv_help_parameters(fieldnames(gdat_data.gdat_params)); gdat_params = gdat_data.gdat_params; % no inputs if nargin==0 % return defaults and list of keywords return end do_mdsopen_mdsclose = 1; % treat 1st arg if nargin>=1 if isempty(shot) % means mdsopen(shot) already performed shot = mdsipmex(2,'$SHOT'); gdat_data.shot = shot; do_mdsopen_mdsclose = 0; if ischar(shot) || isempty(shot) if gdat_params.nverbose>=1 if isstruct(data_request) && isfield(data_request,'data_request') warning(['shot cannot be opened with ' data_request.data_request]); elseif ischar(data_request) warning(['shot cannot be opened with ' data_request]); else warning(['shot cannot be opened']); end end return end elseif isnumeric(shot) gdat_data.shot = shot; elseif ischar(shot) ivarargin_first_char = 1; else if gdat_params.nverbose>=1; warning('type of 1st argument unexpected, should be numeric or char'); end error_status=2; return end if nargin==1 % Only shot number given. If there is a default data_request set it and continue, otherwise return return end end % 2nd input argument if not part of pairs if nargin>=2 && ivarargin_first_char~=1 if isempty(data_request) return end % 2nd arg can be a structure with all options except shot_number, or a string for the pathname or keyword, or the start of pairs string/value for the parameters if isstruct(data_request) if ~isfield(data_request,'data_request') if gdat_params.nverbose>=1; warning('expects field data_request in input parameters structure'); end error_status=3; return end data_request.data_request = lower(data_request.data_request); data_request_eff = data_request.data_request; gdat_params = data_request; else % since data_request is char check from nb of args if it is data_request or a start of pairs if mod(nargin-1,2)==0 ivarargin_first_char = 2; else ivarargin_first_char = 3; data_request_eff = data_request; end end end if ~isstruct(data_request) gdat_params.data_request = data_request_eff; end % if start pairs from shot or data_request, shift varargin if ivarargin_first_char==1 varargin_eff{1} = shot; varargin_eff{2} = data_request; varargin_eff(3:nargin) = varargin(:); elseif ivarargin_first_char==2 varargin_eff{1} = data_request; varargin_eff(2:nargin-1) = varargin(:); else varargin_eff(1:nargin-2) = varargin(:); end % extract parameters from pairs of varargin: if (nargin>=ivarargin_first_char) if mod(nargin-ivarargin_first_char+1,2)==0 for i=1:2:nargin-ivarargin_first_char+1 if ischar(varargin_eff{i}) % enforce lower case for any character driven input if ischar(varargin_eff{i+1}) gdat_params.(lower(varargin_eff{i})) = lower(varargin_eff{i+1}); else gdat_params.(lower(varargin_eff{i})) = varargin_eff{i+1}; end else if gdat_params.nverbose>=1; warning(['input argument nb: ' num2str(i) ' is incorrect, expects a character string']); end error_status=401; return end end else if gdat_params.nverbose>=1; warning('number of input arguments incorrect, cannot make pairs of parameters'); end error_status=402; return end end data_request_eff = gdat_params.data_request; % in case was defined in pairs % if it is a request_keyword copy it: ij=strmatch(data_request_eff,data_request_names_all,'exact'); if ~isempty(ij); gdat_data.gdat_request = data_request_names_all{ij}; if isfield(data_request_names.all.(data_request_names_all{ij}),'description') && ~isempty(data_request_names.all.(data_request_names_all{ij}).description) % copy description of keyword gdat_data.request_description = data_request_names.all.(data_request_names_all{ij}).description; end end % special treatment if shot and data_request given within pairs if isfield(gdat_params,'shot') shot = gdat_params.shot; % should use only gdat_params.shot but change shot to make sure gdat_data.shot = gdat_params.shot; gdat_params=rmfield(gdat_params,'shot'); end if ~isfield(gdat_params,'data_request') || isempty(gdat_params.data_request) % warning('input for ''data_request'' missing from input arguments') % might be correct, asking for list of requests error_status=5; return end gdat_data.gdat_params = gdat_params; % re-assign main variables to make sure use the one in gdat_data structure shot = gdat_data.shot; data_request_eff = gdat_data.gdat_params.data_request; error_status = 6; % at least reached this level liuqe_version = 1; if isfield(gdat_data.gdat_params,'liuqe') && ~isempty(gdat_data.gdat_params.liuqe) liuqe_version = gdat_data.gdat_params.liuqe; else gdat_data.gdat_params.liuqe = liuqe_version; end substr_liuqe = ''; if liuqe_version==2 || liuqe_version==3 substr_liuqe = ['_' num2str(liuqe_version)]; end % special treatment for model shot=-1 or preparation shot >=100'000 begstr = ''; if shot==-1 || shot>=100000 || liuqe_version==-1 % requires FBTE liuqe_version = -1; begstr = 'tcv_eq( "'; substr_liuqe = '", "FBTE" )'; end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Specifications on how to get the data provided in tcv_requests_mapping mapping_for_tcv = tcv_requests_mapping(data_request_eff); gdat_data.label = mapping_for_tcv.label; ishot=NaN; if do_mdsopen_mdsclose % mdsdefaultserver tcv1.epfl.ch; % should be in tcv general path, but set-it in the meantime... if liuqe_version==-1 ishot = mdsopen('pcs', shot); else ishot = mdsopen(shot); % if ishot equal to shot, then mdsclose at the end end if ishot~=shot if gdat_params.nverbose>=1; warning(['cannot open shot= ' num2str(shot)]); end return end end % fill again at end to have full case, but here to have present status in case of early return gdat_data.gdat_params.help = tcv_help_parameters(fieldnames(gdat_data.gdat_params)); gdat_data.mapping_for.tcv = mapping_for_tcv; gdat_params = gdat_data.gdat_params; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % 1st treat the simplest method: "tdi" (and tdiliuqe) if strcmp(mapping_for_tcv.method(1:3),'tdi') % need to treat liuqe2, model, etc from options.... substr_tdi = ''; if strcmp(mapping_for_tcv.method,'tdiliuqe'); substr_tdi = substr_liuqe; end if iscell(mapping_for_tcv.expression) if length(mapping_for_tcv.expression)>0 % series of arguments for tdi given in each cell eval_expr = ['tdi(''' mapping_for_tcv.expression{1} substr_tdi '''']; for i=2:length(mapping_for_tcv.expression) eval_expr = [eval_expr ',''' mapping_for_tcv.expression{i} '''']; end eval_expr = [eval_expr ');']; aatmp = eval(eval_expr); else % empty or wrong expression error_status=701; return end else if liuqe_version==-1 mapping_for_tcv_expression_eff = mapping_for_tcv.expression; if strcmp(lower(mapping_for_tcv.expression(1:8)),'\results') mapping_for_tcv_expression_eff = mapping_for_tcv.expression(11:end); end eval_expr = ['tdi(''' begstr mapping_for_tcv_expression_eff substr_liuqe ''');'] else eval_expr = ['tdi(''' mapping_for_tcv.expression substr_tdi ''');']; end aatmp=eval(eval_expr); end if isempty(aatmp.data) || isempty(aatmp.dim) % || ischar(aatmp.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' eval_expr ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp('check .gdat_request list'); end return end gdat_data.data = aatmp.data; gdat_data.dim = aatmp.dim; nbdims = length(gdat_data.dim); if mapping_for_tcv.timedim==-1; % try to find time dim from units idim_non1 = []; len_dim = []; for i=1:length(aatmp.dimunits) if strcmp(aatmp.dimunits{i},'s'); mapping_for_tcv.timedim = i; end if length(aatmp.dim{i})>1 idim_non1(end+1) = i; len_dim(end+1) = length(aatmp.dim{i}); end end if length(idim_non1)==1 % only one dim non 1, assume it is time mapping_for_tcv.timedim = idim_non1(1); else [aamax,iaamax]=max(len_dim); if aamax./min(len_dim)>100 mapping_for_tcv.timedim = idim_non1(iaamax); end end if mapping_for_tcv.timedim==-1 % assume last one except if of length 1 mapping_for_tcv.timedim = nbdims; if (size(gdat_data.data,nbdims)==1 && nbdims>1); mapping_for_tcv.timedim = nbdims-1; end end end dim_nontim = setdiff([1:nbdims],mapping_for_tcv.timedim); if ~isempty(dim_nontim) % since most cases have at most 2d, copy as array if data is 2D and as cell if 3D or more if length(dim_nontim)==1 gdat_data.x = gdat_data.dim{dim_nontim(1)}; else gdat_data.x = gdat_data.dim(dim_nontim); end end gdat_data.t = gdat_data.dim{mapping_for_tcv.timedim}; gdat_data.units = aatmp.units; gdat_data.dimunits = aatmp.dimunits; if mapping_for_tcv.gdat_timedim>0 && mapping_for_tcv.gdat_timedim ~= mapping_for_tcv.timedim % shift timedim to gdat_timedim data(i,j,...itime,k,...) -> data(i,inewtime,j,...,k,...) % note that this means that gdat_data.x and gdat_data.t are same and correct, % only .data, .dim and .dimunits need to be changed iprev=[1:nbdims]; ij=find(dim_nontim>mapping_for_tcv.gdat_timedim-1); inew=[1:mapping_for_tcv.gdat_timedim-1 mapping_for_tcv.timedim dim_nontim(ij)]; data_sizes = size(aatmp.data); gdat_data.data = NaN*ones(data_sizes(inew)); abcol=ones(1,nbdims)*double(':'); abcomma=ones(1,nbdims)*double(','); dimstr_prev=['(' repmat(':,',1,mapping_for_tcv.timedim-1) 'it,' ... repmat(':,',1,nbdims-mapping_for_tcv.timedim-1) ':)']; dimstr_new=['(' repmat(':,',1,mapping_for_tcv.gdat_timedim-1) 'it,' ... repmat(':,',1,nbdims-mapping_for_tcv.gdat_timedim-1) ':)']; % eval gdat_data.data(;,:,...,it,...) = aatmp.data(:,:,:,it,...); for it=1:size(aatmp.data,mapping_for_tcv.timedim) shift_eval = ['gdat_data.data' dimstr_new ' = aatmp.data' dimstr_prev ';']; eval(shift_eval); end gdat_data.dim = aatmp.dim(inew); gdat_data.dimunits = aatmp.dimunits(inew); else mapping_for_tcv.gdat_timedim = mapping_for_tcv.timedim; end gdat_data.data_fullpath=[mapping_for_tcv.expression substr_tdi]; % end of method "tdi" %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% elseif strcmp(mapping_for_tcv.method,'expression') % 2nd: method="expression" % assume expression contains an expression to evaluate and which creates a local structure into variable gdat_tmp % we copy the structure, to make sure default nodes are defined and to avoid if return is an closed object like tdi % eval_expr = [mapping_for_tcv.expression ';']; eval([mapping_for_tcv.expression ';']); if isempty(gdat_tmp) || (~isstruct(gdat_tmp) & ~isobject(gdat_tmp)) if (gdat_params.nverbose>=1); warning(['expression does not create a gdat_tmp structure: ' mapping_for_tcv.expression]); end error_status=801; return end tmp_fieldnames = fieldnames(gdat_tmp); if sum(strcmp(tmp_fieldnames,'data'))==0 % note: cannot do isfield since gdat_tmp might be an object if (gdat_params.nverbose>=1); warning(['expression does not return a child name ''data'' for ' data_request_eff]); end end for i=1:length(tmp_fieldnames) gdat_data.(tmp_fieldnames{i}) = gdat_tmp.(tmp_fieldnames{i}); end % add .t and .x in case only dim is provided % do not allow shifting of timedim since should be treated in the relevant expression ijdim=find(strcmp(tmp_fieldnames,'dim')==1); if ~isempty(ijdim) nbdims = length(gdat_data.dim); if mapping_for_tcv.timedim==-1; mapping_for_tcv.timedim = nbdims; if (size(gdat_data.data,nbdims)==1 && nbdims>1); mapping_for_tcv.timedim = nbdims-1; end end dim_nontim = setdiff([1:nbdims],mapping_for_tcv.timedim); ijt=find(strcmp(tmp_fieldnames,'t')==1); if isempty(ijt) gdat_data.t = gdat_data.dim{mapping_for_tcv.timedim}; end ijx=find(strcmp(tmp_fieldnames,'x')==1); if isempty(ijx) if ~isempty(dim_nontim) % since most cases have at most 2d, copy as array if data is 2D and as cell if 3D or more if length(dim_nontim)==1 gdat_data.x = gdat_data.dim{dim_nontim(1)}; else gdat_data.x = gdat_data.dim(dim_nontim); end end end gdat_data.data_fullpath=mapping_for_tcv.expression; end % end of method "expression" %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% elseif strcmp(mapping_for_tcv.method,'switchcase') switch data_request_eff % not lower(...) since data_request_eff should be lower case already at this stage % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % First the request names valid for "all" machines: % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'a_minor','rgeom'} % compute average minor or major radius (on z=zaxis normally) nodenameeff=['\results::r_max_psi' substr_liuqe]; rmaxpsi=tdi(nodenameeff); if isempty(rmaxpsi.data) || isempty(rmaxpsi.dim) || ~any(~isnan(rmaxpsi.data)) % || ischar(rmaxpsi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end nodenameeff2=['\results::r_min_psi' substr_liuqe]; rminpsi=tdi(nodenameeff2); if isempty(rminpsi.data) || isempty(rminpsi.dim) || ~any(~isnan(rminpsi.data)) % || ischar(rminpsi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end ij=find(rmaxpsi.data<0.5 | rmaxpsi.data>1.2); if ~isempty(ij); rmaxpsi.data(ij)=NaN; end ij=find(rminpsi.data<0.5 | rminpsi.data>1.2); if ~isempty(ij); rminpsi.data(ij)=NaN; end if strcmp(data_request_eff,'a_minor') gdat_data.data=0.5.*(rmaxpsi.data(end,:) - rminpsi.data(end,:)); gdat_data.data_fullpath=[nodenameeff ' - ' nodenameeff2 ' /2']; elseif strcmp(data_request_eff,'rgeom') gdat_data.data=0.5.*(rmaxpsi.data(end,:) + rminpsi.data(end,:)); gdat_data.data_fullpath=[nodenameeff ' + ' nodenameeff2 ' /2']; else if (gdat_params.nverbose>=1); warning(['should not be in this case with data_request_eff = ' data_request_eff]); end return end gdat_data.dim = rmaxpsi.dim(2); gdat_data.t = gdat_data.dim{1}; if any(strcmp(fieldnames(rmaxpsi),'units')) gdat_data.units = rmaxpsi.units; end gdat_data.dimunits = rmaxpsi.dimunits(2); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'zgeom'} % compute average minor or major radius (on z=zaxis normally) nodenameeff=['\results::z_contour' substr_liuqe]; zcontour=tdi(nodenameeff); if isempty(zcontour.data) || isempty(zcontour.dim) || ~any(~isnan(zcontour.data)) % || ischar(zcontour.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end if strcmp(data_request_eff,'zgeom') gdat_data.data=0.5.*(max(zcontour.data,[],1) + min(zcontour.data,[],1)); gdat_data.data_fullpath=['(max+min)/2 of ' nodenameeff]; gdat_data.dim{1} = zcontour.dim{2}; gdat_data.dimunits{1} = zcontour.dimunits{2}; else if (gdat_params.nverbose>=1); warning(['should not be in this case with data_request_eff = ' data_request_eff]); end return end gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; if any(strcmp(fieldnames(zcontour),'units')) gdat_data.units = zcontour.units; end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'b0'} % B0 at R0=0.88 R0EXP=0.88; if liuqe_version==-1 nodenameeff = 'tcv_eq("BZERO","FBTE")'; tracetdi=tdi(nodenameeff); gdat_data.data = tracetdi.data; else nodenameeff=['\magnetics::iphi']; tracetdi=tdi(nodenameeff); gdat_data.data=192.E-07 * 0.996 *tracetdi.data/R0EXP; end if isempty(tracetdi.data) || isempty(tracetdi.dim) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end return end gdat_data.data_fullpath=[nodenameeff]; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{1}; if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.units = tracetdi.units; end gdat_data.dimunits = tracetdi.dimunits; gdat_data.request_description = ['vacuum magnetic field at R0=' num2str(R0EXP) 'm; COCOS=17']; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'betan'} % 100*beta / |Ip[MA] * B0[T]| * a[m] % get B0 from gdat_tcv, without re-opening the shot and using the same parameters except data_request % easily done thanks to structure call for options params_eff = gdat_data.gdat_params; params_eff.data_request='b0'; b0=gdat_tcv([],params_eff); % note: no need to set .doplot=0 since gdat_tcv does not call gdat_plot in any case params_eff.data_request='ip'; ip=gdat_tcv([],params_eff); params_eff.data_request='beta'; beta=gdat_tcv([],params_eff); params_eff.data_request='a_minor'; a_minor=gdat_tcv([],params_eff); % use beta as time base if isempty(b0.data) || isempty(b0.dim) || isempty(ip.data) || isempty(ip.dim) || isempty(a_minor.data) || isempty(a_minor.dim) || isempty(beta.data) || isempty(beta.dim) if (gdat_params.nverbose>=1); warning(['problems loading data for data_request= ' data_request_eff]); end return end gdat_data.dim = beta.dim; gdat_data.t = beta.dim{1}; gdat_data.data = beta.data; ij=find(~isnan(ip.data)); ip_t = interp1(ip.dim{1}(ij),ip.data(ij),gdat_data.t); ij=find(~isnan(b0.data)); b0_t = interp1(b0.dim{1}(ij),b0.data(ij),gdat_data.t); ij=find(~isnan(a_minor.data)); a_minor_t = interp1(a_minor.dim{1}(ij),a_minor.data(ij),gdat_data.t); gdat_data.data = 100.*beta.data ./ abs(ip_t).*1.e6 .* abs(b0_t) .* a_minor_t; gdat_data.data_fullpath='100*beta/ip*1e6*b0*a_minor, each from gdat_tcv'; gdat_data.units = ''; gdat_data.dimunits{1} = 's'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'cxrs'} %not yet finished, just started % load typical data from cxrs, Ti, ni, vtori and vpoli (if available), as well as zeff from cxrs % if 'fit' option is added: 'fit',1, then the fitted profiles are returned % % sub_nodes names from CXRS_get_profiles function, lower case when used in gdat sub_nodes = {'Ti','vTor','vPol','nC','Zeff'}; % first node is also copied into data, choose "default' one sub_nodes_out = lower({'Ti','vTor','vPol','ni','Zeff'}); % sub_nodes_units = {'eV','m/s','m/s','m^{-3}',''}; % first node is also copied into data, choose "default' one % use A. Karpushov routine to get profiles and then copy the data or the fitted profiles aa=CXRS_get_profiles; cxrs_params = aa.param; cxrs_params.k_plot=0; cxrs_params.k_debug=0; % add params from gdat call params_eff = gdat_data.gdat_params; if isfield(params_eff,'cxrs_plot') && params_eff.cxrs_plot>0 cxrs_plot = params_eff.cxrs_plot; else cxrs_plot = 0; end gdat_data.gdat_params.cxrs_plot = cxrs_plot; if isfield(params_eff,'time_interval') && ~isempty(params_eff.time_interval) && length(params_eff.time_interval)>=2 time_interval = params_eff.time_interval(1:2); cxrs_plot=1; else time_interval = []; end gdat_data.gdat_params.time_interval = time_interval; gdat_data.gdat_params.cxrs_plot = cxrs_plot; if isfield(params_eff,'fit_tension') && params_eff.fit_tension>0 fit_tension = params_eff.fit_tension; else fit_tension = -30.; end gdat_data.gdat_params.fit_tension = fit_tension; cxrs_params.prof.Ti.taus = fit_tension; cxrs_params.prof.vi.taus = fit_tension; cxrs_params.prof.nc.taus = fit_tension; cxrs_params.prof.zeff.taus = fit_tension; cxrs_params.k_plot = cxrs_plot; cxrs_profiles = CXRS_get_profiles(shot,[1 2 3],time_interval,cxrs_params); inb_times = length(cxrs_profiles.Times); gdat_data.cxrs_params = cxrs_profiles.param; if isempty(cxrs_profiles.Times) || ~isfield(cxrs_profiles,'proffit') if (gdat_params.nverbose>=1); warning(['problems loading data with CXRS_get_profiles for data_request= ' data_request_eff]); end for i=1:length(sub_nodes) sub_eff_out = sub_nodes_out{i}; gdat_data.(sub_eff_out).fit.data = []; gdat_data.(sub_eff_out).fit.rho = []; gdat_data.(sub_eff_out).fit.error_bar = []; gdat_data.(sub_eff_out).raw.data = []; gdat_data.(sub_eff_out).raw.rho = []; gdat_data.(sub_eff_out).raw.error_bar = []; gdat_data.(sub_eff_out).raw.error_bar_rho = []; gdat_data.(sub_eff_out).raw.cxrs_system = []; gdat_data.time_interval = []; gdat_data.(sub_eff_out).units = sub_nodes_units{i}; if i==1 gdat_data.data = gdat_data.(sub_eff_out).fit.data; gdat_data.x = gdat_data.(sub_eff_out).fit.rho; gdat_data.error_bar = gdat_data.(sub_eff_out).fit.error_bar; gdat_data.units = gdat_data.(sub_eff_out).units; end end return end inb_channels =120; % need to change if gets bigger!!! but easier to prefill with NaNs and use the "use" part for i=1:length(sub_nodes) sub_eff = sub_nodes{i}; sub_eff_out = sub_nodes_out{i}; % fits if isfield(cxrs_profiles.proffit,sub_eff) gdat_data.(sub_eff_out).fit.data = cxrs_profiles.proffit.(sub_eff); gdat_data.(sub_eff_out).fit.rho = cxrs_profiles.proffit.([sub_eff '_rho']); gdat_data.(sub_eff_out).fit.error_bar = cxrs_profiles.proffit.(['d' sub_eff]); else gdat_data.(sub_eff_out).fit.data = []; gdat_data.(sub_eff_out).fit.rho = []; gdat_data.(sub_eff_out).fit.error_bar = []; end % raw data (use all data so keep same size) gdat_data.(sub_eff_out).raw.data = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.rho = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.error_bar = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.error_bar_rho = NaN * ones(inb_channels,inb_times); gdat_data.(sub_eff_out).raw.cxrs_system = NaN * ones(inb_channels,inb_times); gdat_data.time_interval = []; for it=1:inb_times if isfield(cxrs_profiles,sub_eff) nb_raw_points = length(cxrs_profiles.(sub_eff){it}.use.y); gdat_data.(sub_eff_out).raw.data(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.y; gdat_data.(sub_eff_out).raw.rho(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.x; gdat_data.(sub_eff_out).raw.error_bar(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.dy; gdat_data.(sub_eff_out).raw.error_bar_rho(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.dx; gdat_data.(sub_eff_out).raw.cxrs_system(1:nb_raw_points,it) = cxrs_profiles.(sub_eff){it}.use.sys; gdat_data.time_interval{it} = cxrs_profiles.(sub_eff){it}.t_lim; end end gdat_data.(sub_eff_out).units = sub_nodes_units{i}; if i==1 gdat_data.data = gdat_data.(sub_eff_out).fit.data; gdat_data.x = gdat_data.(sub_eff_out).fit.rho; gdat_data.error_bar = gdat_data.(sub_eff_out).fit.error_bar; gdat_data.units = gdat_data.(sub_eff_out).units; end end gdat_data.t = cxrs_profiles.proffit.time; gdat_data.dim = {gdat_data.x; gdat_data.t}; if isempty(time_interval) gdat_data.data_fullpath=['CXRS_get_profiles(' num2str(shot) ',[1 2 3],[],cxrs_params); % with cxrs_params']; else gdat_data.data_fullpath=['CXRS_get_profiles(' num2str(shot) ',[1 2 3],[' num2str(time_interval) '],cxrs_params); % with cxrs_params']; end gdat_data.dimunits{1} = ''; gdat_data.dimunits{2} = 's'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'eqdsk'} % time=1.; % default time if isfield(gdat_data.gdat_params,'time') && ~isempty(gdat_data.gdat_params.time) time = gdat_data.gdat_params.time; else gdat_data.gdat_params.time = time; if (gdat_params.nverbose>=3); disp(['"time" is expected as an option, choose default time = ' num2str(time)]); end end gdat_data.gdat_params.time = time; gdat_data.t = time; zshift = 0.; if isfield(gdat_data.gdat_params,'zshift') && ~isempty(gdat_data.gdat_params.zshift) zshift = gdat_data.gdat_params.zshift; else gdat_data.gdat_params.zshift = zshift; end gdat_data.gdat_params.zshift = zshift; for itime=1:length(time) time_eff = time(itime); % use read_results updated to effectively obtain an eqdsk with sign correct with COCOS=2 [fnames_readresults]=read_results_for_chease(shot,time_eff,liuqe_version,3,[],[],[],zshift,0,1); if isempty(fnames_readresults) if gdat_params.nverbose>=1; warning(['could not create eqdsk file from read_results_for_chease with data_request= ' data_request_eff]); end return end eqdskval=read_eqdsk(fnames_readresults{4},7,0,[],[],1); % LIUQE is 17 but read_results divided psi by 2pi thus 7 for i=1:length(fnames_readresults) unix(['rm ' fnames_readresults{i}]); end % transform to cocos=2 since read_results originally assumed it was cocos=2 cocos_in = 2; [eqdsk_cocos_in, eqdsk_cocosout_IpB0pos,cocos_inout]=eqdsk_cocos_transform(eqdskval,[7 cocos_in]); fnamefull = fullfile(['/tmp/' getenv('USER')],['EQDSK_' num2str(shot) 't' num2str(time_eff,'%.4f')]); % We still write COCOS=2 case, since closer to standard (in /tmp) write_eqdsk(fnamefull,eqdsk_cocos_in,cocos_in,[],[],[],1); % Now gdat_tcv should return the convention from LIUQE which is COCOS=17, except if specified in option % create standard filename name from shot, time_eff (cocos will be added by write_eqdsk) cocos_out = 17; if isfield(gdat_data.gdat_params,'cocos') && ~isempty(gdat_data.gdat_params.cocos) cocos_out = gdat_data.gdat_params.cocos; else gdat_data.gdat_params.cocos = cocos_out; end [eqdsk_cocosout, eqdsk_cocosout_IpB0pos,cocos_inout]=eqdsk_cocos_transform(eqdsk_cocos_in,[cocos_in cocos_out]); % for several times, use array of structure for eqdsks, % cannot use it for psi(R,Z) in .data and .x since R, Z might be different at different times, % so project psi(R,Z) on Rmesh, Zmesh of 1st time if length(time) > 1 gdat_data.eqdsk{itime} = write_eqdsk(fnamefull,eqdsk_cocosout,cocos_out); if itime==1 gdat_data.data(:,:,itime) = gdat_data.eqdsk{itime}.psi; gdat_data.dim{1} = gdat_data.eqdsk{itime}.rmesh; gdat_data.dim{2} = gdat_data.eqdsk{itime}.zmesh; else xx=repmat(reshape(gdat_data.dim{1},length(gdat_data.dim{1}),1),1,size(gdat_data.eqdsk{itime}.psi,2)); yy=repmat(reshape(gdat_data.dim{2},1,length(gdat_data.dim{2})),size(gdat_data.eqdsk{itime}.psi,1),1); aa = interpos2Dcartesian(gdat_data.eqdsk{itime}.rmesh,gdat_data.eqdsk{itime}.zmesh ... ,gdat_data.eqdsk{itime}.psi,xx,yy,-1,-1); gdat_data.data(:,:,itime) = aa; end else gdat_data.eqdsk = write_eqdsk(fnamefull,eqdsk_cocosout,cocos_out); gdat_data.data = gdat_data.eqdsk.psi; gdat_data.dim{1} = gdat_data.eqdsk.rmesh; gdat_data.dim{2} = gdat_data.eqdsk.zmesh; end end gdat_data.dim{3} = gdat_data.t; gdat_data.x = gdat_data.dim(1:2); gdat_data.data_fullpath=['psi(R,Z) and eqdsk from read_eqdsk from LIUQE' num2str(liuqe_version) ';zshift=' num2str(zshift)]; gdat_data.units = 'T m^2'; gdat_data.dimunits = {'m','m','s'}; gdat_data.request_description = ['data=psi, x=(R,Z), eqdsk contains eqdsk structure with which ' ... 'plot_eqdsk, write_eqdsk, read_eqdsk can be used']; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'mhd'} % load n=1, 2 and 3 Bdot from magnetic measurements n1=tdi('abs(mhdmode("LFS",1,1))'); n2=tdi('abs(mhdmode("LFS",2,1))'); n3=tdi('abs(mhdmode("LFS",3,1))'); if ~isempty(n1.data) gdat_data.data(:,1) = reshape(n1.data,length(n1.data),1); if length(n2.data)==length(n1.data); gdat_data.data(:,2) = reshape(n2.data,length(n2.data),1); end if length(n3.data)==length(n1.data); gdat_data.data(:,3) = reshape(n3.data,length(n3.data),1); end gdat_data.dim{1} = n1.dim{1}; gdat_data.t = gdat_data.dim{1}; gdat_data.dim{2} = [1; 2; 3]; gdat_data.dimunits{1} = n1.dimunits{1}; gdat_data.dimunits{2} = 'n number'; gdat_data.units = 'T/s'; gdat_data.data_fullpath='abs(mhdmode("LFS",n,1))'; gdat_data.request_description = 'delta_Bdot from magnetic probes to get n=1, 2 and 3'; gdat_data.label = {'n=1','n=2','n=3'}; % can be used in legend(gdat_data.label) end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'ne','te'} % ne or Te from Thomson data on raw z mesh vs (z,t) if ~(isfield(gdat_data.gdat_params,'edge') && ~isempty(gdat_data.gdat_params.edge) && ... gdat_data.gdat_params.edge>0) gdat_data.gdat_params.edge = 0; end [gdat_data] = get_thomson_raw_data(shot,data_request_eff,gdat_data,gdat_data.gdat_params.edge,gdat_params.nverbose); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'ne_rho', 'te_rho', 'nete_rho'} % if nete_rho, do first ne, then Te later (so fir stuff already done) zshift = 0.; if isfield(gdat_data.gdat_params,'zshift') && ~isempty(gdat_data.gdat_params.zshift) zshift = gdat_data.gdat_params.zshift; else gdat_data.gdat_params.zshift = zshift; end if ~(isfield(gdat_data.gdat_params,'edge') && ~isempty(gdat_data.gdat_params.edge) && ... gdat_data.gdat_params.edge>0) gdat_data.gdat_params.edge = 0; end [gdat_data] = get_thomson_raw_data(shot,data_request_eff,gdat_data,gdat_data.gdat_params.edge,gdat_params.nverbose); % construct rho mesh edge_str_ = ''; edge_str_dot = ''; if gdat_data.gdat_params.edge edge_str_ = '_edge'; edge_str_dot = '.edge'; end psi_max=tdi(['\results::thomson' edge_str_dot ':psi_max' substr_liuqe]); psiscatvol=tdi(['\results::thomson' edge_str_dot ':psiscatvol' substr_liuqe]); if abs(zshift)>1e-5 % calculate new psiscatvol psitdi=tdi(['\results::psi' substr_liuqe]); rmesh=psitdi.dim{1}; zmesh=psitdi.dim{2}; zthom=mdsdata('dim_of(\thomson:te,1)'); zeffshift=zshift; % set zeffshift time array same as psitdi switch length(zeffshift) case 1 zeffshift=zeffshift * ones(size(psitdi.dim{3})); case length(psitdi.dim{3}) % ok case length(psiscatvol.dim{1}) zeffshift=interp1(psiscatvol.dim{1},zeffshift,psitdi.dim{3}); otherwise if (gdat_params.nverbose>=1); disp(' bad time dimension for zshift') disp(['it should be 1 or ' num2str(length(psiscatvol.dim{1})) ' or ' num2str(length(psitdi.dim{3}))]) end end for it=1:length(psiscatvol.dim{1}) itpsitdi=iround(psitdi.dim{3},psiscatvol.dim{1}(it)); psirz=psitdi.data(:,:,itpsitdi); psiscatvol0=griddata(rmesh,zmesh,psirz',0.9*ones(size(zthom)),zthom-zeffshift(itpsitdi)); psiscatvol.data(it,:)=psiscatvol0; end end if ~isempty(psiscatvol.data) && ~ischar(psiscatvol.data) && ~isempty(psi_max.data) && ~ischar(psi_max.data) for ir=1:length(psiscatvol.dim{2}) rho(ir,:)= sqrt(1.-psiscatvol.data(:,ir)./psi_max.data(:))'; end else rho=NaN; end gdat_data.dim{1}=rho; gdat_data.dimunits=[{'sqrt(psi_norm)'} ; {'time [s]'}]; gdat_data.x=rho; %%%%%%%%%%% add fitted profiles if 'fit'>=1 default_fit_type = 'conf'; if ~isfield(gdat_data.gdat_params,'fit') || ~isempty(gdat_data.gdat_params.fit) gdat_data.gdat_params.fit = 1; end if gdat_data.gdat_params.fit>0 % default is from proffit:avg_time if ~(isfield(gdat_data.gdat_params,'fit_type') && ~isempty(gdat_data.gdat_params.fit_type)) || ~any(strcmp(gdat_data.gdat_params.fit_type,{'local', 'avg', 'conf'})) gdat_data.gdat_params.fit_type = default_fit_type; end switch gdat_data.gdat_params.fit_type case 'avg' def_proffit = '\results::proffit.avg_time:'; case 'local' def_proffit = '\results::proffit.local_time:'; case 'conf' def_proffit = '\results::conf:'; otherwise if (gdat_params.nverbose>=1); disp('should not be in switch gdat_data.gdat_params.fit_type') disp('ask olivier.sauter@epfl.ch') end return end if strcmp(gdat_data.gdat_params.fit_type,'conf') nodenameeff = [def_proffit data_request_eff(1:2)]; else if strcmp(data_request_eff(1:2),'ne') nodenameeff = [def_proffit 'neft_abs']; % do first ne if nete asked for elseif strcmp(data_request_eff(1:2),'te') nodenameeff = [def_proffit 'teft']; else if (gdat_params.nverbose>=1); disp(['should not be here: data_request_eff, data_request_eff(1:2)= ',data_request_eff, data_request_eff(1:2)]); end end end if isfield(gdat_data.gdat_params,'trialindx') && ~isempty(gdat_data.gdat_params.trialindx) && ... gdat_data.gdat_params.trialindx>=0 nodenameeff=[nodenameeff ':trial']; trialindx = gdat_data.gdat_params.trialindx; else gdat_data.gdat_params.trialindx = []; trialindx = []; end tracetdi=tdi(nodenameeff); if isempty(trialindx) if ~isempty(tracetdi.data) && ~isempty(tracetdi.dim) && ~ischar(tracetdi.data) gdat_data.fit.data = tracetdi.data; else if gdat_params.nverbose>=1 disp([nodenameeff ' is empty, thus no fits, check hldsi(shot) and may need to run anaprofs?']) end gdat_data.fit.data = []; gdat_data.fit.data_fullpath = [nodenameeff ' is empty']; return end else if ~isempty(tracetdi.data) && size(tracetdi.data,3)>=trialindx+1 gdat_data.fit.data = tracetdi.data(:,:,trialindx+1); else if gdat_params.nverbose>=1 disp([nodenameeff ' with trialindx=' num2str(trialindx) ' is empty, thus no fits, check hldsi(shot) and may need to run anaprofs?']) end gdat_data.fit.data = []; gdat_data.fit.data_fullpath = [nodenameeff ' with trialindx=' num2str(trialindx) ' is empty']; return end end gdat_data.fit.x=tracetdi.dim{1}; gdat_data.fit.t=tracetdi.dim{2}; if mapping_for_tcv.timedim~=2 | mapping_for_tcv.gdat_timedim~=2 if (gdat_params.nverbose>=1); disp(['unexpected timedim in fit: data_request_eff= ' data_request_eff ... ', mapping_for_tcv.timedim= ' mapping_for_tcv.timedim ... ', mapping_for_tcv.gdat_timedim= ' mapping_for_tcv.gdat_timedim]); end end gdat_data.dim=tracetdi.dim(1:2); gdat_data.dimunits=tracetdi.dimunits(1:2); if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.fit.units=tracetdi.units; end gdat_data.fit.data_fullpath = nodenameeff; % do te as well if nete asked for if strcmp(data_request_eff(1:4),'nete') gdat_data.fit.ne.data = gdat_data.fit.data; gdat_data.fit.ne.units = gdat_data.fit.units; if strcmp(gdat_data.gdat_params.fit_type,'conf') nodenameeff = [def_proffit 'te']; else nodenameeff = [def_proffit 'teft']; end if ~isempty(trialindx); nodenameeff=[nodenameeff ':trial']; end tracetdi=tdi(nodenameeff); if isempty(trialindx) gdat_data.fit.te.data = tracetdi.data; else if ~isempty(tracetdi.data) && size(tracetdi.data,3)>=trialindx+1 gdat_data.fit.te.data = tracetdi.data(:,:,trialindx+1); else return end end if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.fit.te.units=tracetdi.units; end % construct pe=1.6022e-19*ne*te gdat_data.fit.data = 1.6022e-19.*gdat_data.fit.ne.data .* gdat_data.fit.te.data; gdat_data.fit.units = 'N/m^2; 1.6022e-19 ne Te'; gdat_data.fit.data_fullpath = [gdat_data.fit.data_fullpath ' ; ' nodenameeff ' and pe in data']; end else gdat_data.gdat_params.fit_type = default_fit_type; end %%%%%%%%%%% % if nete_rho, copy data as .ne, get .te and put pe=e ne Te in data: if strcmp(data_request_eff(1:4),'nete') gdat_data.ne.data = gdat_data.data; gdat_data.ne.error_bar = gdat_data.error_bar; gdat_data.ne.firrat=gdat_data.firrat; gdat_data.ne.units = 'm^{-3}'; gdat_data = rmfield(gdat_data,{'firrat','data_raw','error_bar_raw'}); % nodenameeff=['\results::thomson' edge_str_dot ':te']; tracetdi=tdi(nodenameeff); nodenameeff=['\results::thomson' edge_str_dot ':te; error_bar']; tracestd=tdi(['\results::thomson' edge_str_dot ':te:error_bar']); gdat_data.te.data=tracetdi.data'; gdat_data.te.error_bar=tracestd.data'; gdat_data.te.units = tracetdi.units; gdat_data.data_fullpath=['pe=1.6e-19*ne*Te in data, .ne, .te from \results::thomson' ... edge_str_dot ':ne and te and projected on rhopol\_norm']; gdat_data.units='N/m^2; 1.6022e-19 ne Te'; gdat_data.data = 1.6022e-19 .* gdat_data.ne.data .* gdat_data.te.data; gdat_data.error_bar = 1.6022e-19 .* (gdat_data.ne.data .* gdat_data.te.error_bar ... + gdat_data.te.data .* gdat_data.ne.error_bar); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'powers'} % note: same time array for all main, ec, ohm, nbi, ... % At this stage fill just ech, later add nbi nodenameeff='\results::toray.input:p_gyro'; tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) || ~any(~isnan(tracetdi.data)) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end return end gdat_data.ec.data = tracetdi.data*1e3; % at this stage p_gyro is in kW' gdat_data.ec.units = 'W'; gdat_data.ec.dim=tracetdi.dim; gdat_data.ec.dimunits=tracetdi.dimunits; gdat_data.ec.t=tracetdi.dim{1}; gdat_data.ec.x=tracetdi.dim{2}; gdat_data.ec.data_fullpath=[nodenameeff]; gdat_data.ec.label='P_{EC}'; % set ec time as reference gdat_data.t = gdat_data.ec.t; gdat_data.dim{1} = gdat_data.t; gdat_data.dimunits{1} = 's'; gdat_data.units = 'W'; % get ohmic power simply from vloop*Ip (minus sign for TCV) ip=gdat([],'ip'); vloop=gdat([],'vloop'); tension = -1e5; vloop_smooth=interpos(vloop.t,vloop.data,gdat_data.t,tension); ip_t = interp1(ip.t,ip.data,gdat_data.t); gdat_data.ohm.data = -vloop_smooth.*ip_t; gdat_data.ohm.units = 'W'; gdat_data.ohm.dim=gdat_data.dim; gdat_data.ohm.dimunits=gdat_data.dimunits; gdat_data.ohm.t=gdat_data.t; gdat_data.ohm.x=[]; gdat_data.ohm.data_fullpath=['-vloop(tens=' num2str(tension,'%.0e') ')*ip, from gdat']; gdat_data.ohm.label='P_{OHM}'; % total power from each and total gdat_data.data(:,1) = gdat_data.ohm.data; gdat_data.data(:,2) = gdat_data.ec.data(:,10); gdat_data.data(:,3) = gdat_data.ec.data(:,10) + gdat_data.ohm.data; gdat_data.dim{2} = [1:3]; gdat_data.dimunits{2} = 'Pohm;Pec;Ptot'; gdat_data.data_fullpath=['tot power from EC and ohm']; gdat_data.label = 'P_{ohm};P_{EC};P_{tot}'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'q_rho'} % q profile on psi from liuqe nodenameeff=['\results::q_psi' substr_liuqe]; if liuqe_version==-1 nodenameeff=[begstr 'q_psi' substr_liuqe]; end tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) || ~any(~isnan(tracetdi.data)) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{2}; gdat_data.data_fullpath=[nodenameeff ' on rhopol']; rhopol_eff = ones(size(tracetdi.dim{1})); rhopol_eff(:) = sqrt(linspace(0,1,length(tracetdi.dim{1}))); gdat_data.dim{1} = rhopol_eff; gdat_data.x = gdat_data.dim{1}; gdat_data.dimunits{1} = ''; gdat_data.dimunits{2} = 's'; gdat_data.units = ''; gdat_data.request_description = 'q(rhopol\_norm)'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'psi_edge'} % psi at edge, 0 by construction in Liuqe, thus not given nodenameeff=['\results::psi_axis' substr_liuqe]; if liuqe_version==-1 nodenameeff=[begstr 'q_psi' substr_liuqe]; end tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) || ~any(~isnan(tracetdi.data)) % || ischar(tracetdi.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end gdat_data.data = tracetdi.data.*0; gdat_data.dim = tracetdi.dim; gdat_data.t = gdat_data.dim{1}; gdat_data.data_fullpath=[' zero ']; gdat_data.dimunits = tracetdi.dimunits; gdat_data.units = tracetdi.units; gdat_data.request_description = '0 since LIUQE construct psi to be zero at LCFS'; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'rhotor_edge','rhotor'} % Phi(LCFS) = int(Bphi dSphi), can use Eq.(11) of "Tokamak coordinate conventions: COCOS" paper: % O. Sauter, S.Yu. Medvedev, Comput. Phys. Commun. 184 (2013) 293–302 % since cocos=17 for LIUQE we get: % q = -dPhi/dpsi => Phi = - int(q*dpsi) which should always have the sign of B0 params_eff = gdat_data.gdat_params; params_eff.data_request='q_rho'; q_rho=gdat_tcv([],params_eff); if isempty(q_rho.data) || isempty(q_rho.dim) || ~any(~isnan(q_rho.data)) % || ischar(q_rho.data) (to add?) if (gdat_params.nverbose>=1); warning(['problems loading data for q_rho for data_request= ' data_request_eff]); end if (gdat_params.nverbose>=3); disp(['rerun LIUQE?']); end return end params_eff.data_request='psi_axis'; % psi_edge=0 with LIUQE psi_axis=gdat_tcv([],params_eff); params_eff.data_request='b0'; % psi_edge=0 with LIUQE b0=gdat_tcv([],params_eff); b0tpsi = interp1(b0.t,b0.data,psi_axis.t); %q_rho on same time base as psi_axis if isempty(psi_axis.data) || isempty(psi_axis.dim) || isempty(q_rho.data) || isempty(q_rho.dim) if (gdat_params.nverbose>=1); warning(['problems loading data for ' nodenameeff ' for data_request= ' data_request_eff]); end return end rhoequal = linspace(0,1,length(q_rho.dim{1})); if strcmp(data_request,'rhotor_edge') gdat_data.data = psi_axis.data; % to have the dimensions correct gdat_data.dim = psi_axis.dim; gdat_data.t = gdat_data.dim{1}; gdat_data.data_fullpath='phi from q_rho, psi_axis and integral(-q dpsi)'; gdat_data.units = 'T m^2'; gdat_data.dimunits{1} = 's'; elseif strcmp(data_request,'rhotor') gdat_data.data = q_rho.data; % to have the dimensions correct gdat_data.dim{1} = ones(size(q_rho.dim{1})); gdat_data.dim{1}(:) = rhoequal; gdat_data.dim{2} = q_rho.dim{2}; gdat_data.t = gdat_data.dim{2}; gdat_data.data_fullpath='sqrt(phitor/phitor_edge), rhotor_edge=sqrt(phitor/B0/pi)'; gdat_data.units = ''; gdat_data.dimunits{1} = 'rhopol\_norm'; gdat_data.dimunits{2} = 's'; end for it=1:length(psi_axis.data) ij=find(~isnan(q_rho.data(:,it))); if ~isempty(ij) [qfit,~,~,phi]=interpos(q_rho.x(ij).^2,q_rho.data(ij,it),rhoequal.^2); dataeff = sqrt(phi .* psi_axis.data(it) ./ b0tpsi(it) ./ pi) ; % Delta_psi = -psi_axis else dataeff = NaN; end if strcmp(data_request,'rhotor_edge') gdat_data.data(it) = dataeff(end); elseif strcmp(data_request,'rhotor') gdat_data.data(:,it) = dataeff./dataeff(end); gdat_data.rhotor_edge(it) = dataeff(end); end gdat_data.b0 = b0tpsi(it); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'rhovol','volume_rho','volume'} % volume_rho = vol(rho); volume = vol(LCFS) = vol(rho=1); % rhovol = sqrt(vol(rho)/vol(rho=1)); nodenameeff='\results::psitbx:vol'; if liuqe_version==-1 nodenameeff=[begstr 'vol' substr_liuqe]; end tracetdi=tdi(nodenameeff); if isempty(tracetdi.data) || isempty(tracetdi.dim) return end gdat_data.units = tracetdi.units; if strcmp(data_request,'volume') gdat_data.data = tracetdi.data(end,:); gdat_data.dim{1} = tracetdi.dim{2}; gdat_data.data_fullpath=['\results::psitbx:vol(end,:)']; gdat_data.dimunits{1} = tracetdi.dimunits{2}; gdat_data.request_description = 'volume(LCFS)=volume(rhopol=1)'; else gdat_data.data = tracetdi.data; gdat_data.dim = tracetdi.dim; gdat_data.dimunits = tracetdi.dimunits; if strcmp(data_request,'volume_rho') gdat_data.data_fullpath=['\results::psitbx:vol']; gdat_data.request_description = 'volume(rho)'; elseif strcmp(data_request,'rhovol') gdat_data.volume_edge = gdat_data.data(end,:); gdat_data.data = sqrt(gdat_data.data./repmat(reshape(gdat_data.volume_edge,1,size(gdat_data.data,2)),size(gdat_data.data,1),1)); gdat_data.data_fullpath='sqrt(\results::psitbx:vol/vol_edge)'; gdat_data.request_description = 'sqrt(volume(rho)/volume(edge))'; else if (gdat_params.nverbose>=1) disp(['should not be here in vol cases with data_request = ' data_request_eff]); end return end end gdat_data.t = gdat_data.dim{mapping_for_tcv.gdat_timedim}; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'sxr'} % sxr from Xtomo by default or dmpx if 'camera','dmpx' is provided %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% case {'profnerho','profterho'} % for backward compatibility but corresponds to ne_rho with param.fit_type='auto' (TCV special) % nodenameeff=['\results::THOMSON.PROFILES.AUTO:' data_request_eff(5:6)]; nodenameeff_vers = [nodenameeff ':version_num']; avers = tdi(nodenameeff_vers); if avers.data==0 % may be because nodes not yet filled in, so call once a node ab=tdi(nodenameeff); avers = tdi(nodenameeff_vers); end if avers.data>0 tracetdi=tdi(nodenameeff); if avers.data < 2.99 % for earlier version the bug made it to have logically (rho,t) gdat_data.data=tracetdi.data; if ~isempty(tracetdi.dim) && ~ischar(tracetdi.data) gdat_data.x=tracetdi.dim{1}; gdat_data.t=tracetdi.dim{2}; error_status=0; else error_status=2; gdat_data.x=[]; gdat_data.t=[]; end else gdat_data.data=tracetdi.data'; % error in dimensions for autofits if ~isempty(tracetdi.dim) && ~ischar(tracetdi.data) if gdat_params.nverbose>=3; disp('assumes dim{2} for x in THOMSON.PROFILES.AUTO'); end gdat_data.x=tracetdi.dim{2}; gdat_data.t=tracetdi.dim{1}; error_status=0; else gdat_data.x=[]; gdat_data.t=[]; error_status=2; end end else tracetdi=avers; gdat_data.x=[]; gdat_data.t=[]; end gdat_data.dim=[{gdat_data.x};{gdat_data.t}]; gdat_data.dimunits=[{'sqrt(psi\_norm)'} ; {'time [s]'}]; if ~isempty(gdat_data.t) && any(strcmp(fieldnames(tracetdi),'units')) gdat_data.units=tracetdi.units; end gdat_data.request_description = 'quick autofits within thomson nodes, using version'; gdat_data.fullpath = ['Thomson autfits from ' nodenameeff]; otherwise if (gdat_params.nverbose>=1); warning(['switchcase= ' data_request_eff ' not known in gdat_tcv']); end error_status=901; return end else if (gdat_params.nverbose>=1); warning(['TCV method=' mapping_for_tcv.method ' not known yet, contact Olivier.Sauter@epfl.ch']); end error_status=602; return end if ishot==shot; mdsclose; end gdat_data.gdat_params.help = tcv_help_parameters(fieldnames(gdat_data.gdat_params)); gdat_data.mapping_for.tcv = mapping_for_tcv; gdat_params = gdat_data.gdat_params; error_status=0; return %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function [firthomratio] = get_fir_thom_rat_data(shot,maintracename,timebase,nverbose); % % since depends on shot number for using auto fit and thomson or thomson edge, use tracename and function here % % maintracename = 'thomson' or 'thomson_edge % % return fir_to_thomson ratio on time=timebase % % normally should use "main" thomson one built from auto fit if possible % take edge one if need be % % default: maintracename = "thomson" % maintracename_eff = 'thomson'; if exist('maintracename') && ~isempty(maintracename) maintracename_eff = maintracename; end firthomratio = NaN; if ~exist('timebase') || isempty(timebase) if (nverbose>=1) disp('need a timebase in get_fir_thom_rat_data') end return end firthomratio = NaN*ones(size(timebase)); if strcmp(maintracename_eff,'thomson') if shot>=23801 tracefirrat=tdi('\results::thomson.profiles.auto:fir_thom_rat'); %time base not same!! if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson.profiles.auto:fir_thom_rat: empty, use thomson:fir_thom_rat'); end tracefirrat=tdi('\results::thomson:fir_thom_rat'); end else tracefirrat=tdi('\results::thomson:fir_thom_rat'); if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson:fir_thom_rat: empty'); end end end elseif strcmp(maintracename_eff,'thomson_edge') if shot>=23801 tracefirrat=tdi('\results::thomson.profiles.auto:fir_thom_rat'); %time base not same!! if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson.profiles.auto:fir_thom_rat: empty, use thomson:fir_thom_rat'); end tracefirrat=tdi('\results::thomson:fir_thom_rat'); end else tracefirrat=tdi('\results::thomson_edge:fir_thom_rat'); if isempty(tracefirrat.data) || ischar(tracefirrat.data) if (nverbose>=1); disp('problem with \results::thomson_edge:fir_thom_rat: empty'); end end end else if (nverbose>=1); disp('bad input in get_fir_thom_rat_data'); end return end if ~isempty(tracefirrat.data) && ~ischar(tracefirrat.data) && any(~isnan(tracefirrat.data)) ... && ~isempty(tracefirrat.dim) && ~isempty(tracefirrat.dim{1}) firthomratio = interp1(tracefirrat.dim{1},tracefirrat.data,timebase); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function [gdat_data] = get_thomson_raw_data(shot,data_request_eff,gdat_data,doedge,nverbose); % try time=mdsdata('\results::thomson:times'); catch if (nverbose>=1) && shot<100000 warning('Problems with \results::thomson:times') warning(['!!!!!!!!!!!!!!!!!!!!!!!!! cannot continue with ' data_request_eff]) end return end if isempty(time) || ischar(time) thomsontimes=time; if (nverbose>=1) && shot<100000 warning('!!!!!!!!!!!!!!!!!!!!!!!!!\results::thomson:times is empty? Check') disp(['!!!!!!!!!!!!!!!!!!!!!!!!! cannot continue with ' data_request_eff]) end return end edge_str_ = ''; edge_str_dot = ''; if doedge edge_str_ = '_edge'; edge_str_dot = '.edge'; end nodenameeff = ['\results::thomson' edge_str_dot ':' data_request_eff(1:2)]; tracetdi=tdi(nodenameeff); gdat_data.data=tracetdi.data'; % Thomson data as (t,z) tracestd=tdi(['\results::thomson' edge_str_dot ':' data_request_eff(1:2) ':error_bar']); gdat_data.error_bar=tracestd.data'; gdat_data.data_fullpath=[nodenameeff '; error_bar']; % add fir if ne requested if strcmp(data_request_eff(1:2),'ne') tracefirrat_data = get_fir_thom_rat_data(shot,['thomson' edge_str_],time,nverbose); gdat_data.firrat=tracefirrat_data; gdat_data.data_raw = gdat_data.data; gdat_data.data = gdat_data.data_raw * diag(tracefirrat_data); gdat_data.error_bar_raw = gdat_data.error_bar; gdat_data.error_bar = gdat_data.error_bar_raw * diag(tracefirrat_data); gdat_data.data_fullpath=[gdat_data.data_fullpath '; fir_thom_rat ; _raw without firrat']; end z=mdsdata('\diagz::thomson_set_up:vertical_pos'); gdat_data.dim=[{z};{time}]; gdat_data.dimunits=[{'Z [m]'} ; {'time [s]'}]; gdat_data.x=z; gdat_data.t=time; % isfield does not work since tracetdi is not a 'struct' but a tdi object, thus use fieldnames if any(strcmp(fieldnames(tracetdi),'units')) gdat_data.units=tracetdi.units; end