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Commit 01dcbfc3 authored by Antoine Cyril David Hoffmann's avatar Antoine Cyril David Hoffmann
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scripts updates

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matlab/plots/plot_radial_transport_and_shear.m
+ 6
− 6
View file @ 01dcbfc3
...@@ -15,10 +15,10 @@ shear_infty_std = std (mean(shear_maxx_avgy(:,its2D:ite2D),1)); ...@@ -15,10 +15,10 @@ shear_infty_std = std (mean(shear_maxx_avgy(:,its2D:ite2D),1));
fig = figure; FIGNAME = ['ZF_transport_drphi','_',PARAMS];set(gcf, 'Position', [100, 100, 1200, 600]) fig = figure; FIGNAME = ['ZF_transport_drphi','_',PARAMS];set(gcf, 'Position', [100, 100, 1200, 600])
subplot(311) subplot(311)
% yyaxis left % yyaxis left
plot(Ts0D,PGAMMA_RI*SCALE,'DisplayName','$\langle n_i d\phi/dz \rangle_z$'); hold on; plot(Ts0D,PGAMMA_RI*SCALE,'DisplayName','$\langle n_i \partial_y\phi \rangle_y$'); hold on;
plot(Ts0D(its0D:ite0D),ones(ite0D-its0D+1,1)*gamma_infty_avg, '-k',... plot(Ts0D(its0D:ite0D),ones(ite0D-its0D+1,1)*gamma_infty_avg, '-k',...
'DisplayName',['$\Gamma^{\infty} = $',num2str(gamma_infty_avg),'$\pm$',num2str(gamma_infty_std)]); 'DisplayName',['$\Gamma^{\infty} = $',num2str(gamma_infty_avg),'$\pm$',num2str(gamma_infty_std)]);
grid on; set(gca,'xticklabel',[]); ylabel('$\Gamma_r$') grid on; set(gca,'xticklabel',[]); ylabel('$\Gamma_x$')
ylim([0,5*abs(gamma_infty_avg)]); xlim([Ts0D(1),Ts0D(end)]); ylim([0,5*abs(gamma_infty_avg)]); xlim([Ts0D(1),Ts0D(end)]);
title(['$\nu_{',CONAME,'}=$', num2str(NU), ', $\eta=$',num2str(ETAB/ETAN),... title(['$\nu_{',CONAME,'}=$', num2str(NU), ', $\eta=$',num2str(ETAB/ETAN),...
', $L=',num2str(L),'$, $N=',num2str(Nx),'$, $(P,J)=(',num2str(PMAXI),',',num2str(JMAXI),')$,',... ', $L=',num2str(L),'$, $N=',num2str(Nx),'$, $(P,J)=(',num2str(PMAXI),',',num2str(JMAXI),')$,',...
...@@ -29,10 +29,10 @@ fig = figure; FIGNAME = ['ZF_transport_drphi','_',PARAMS];set(gcf, 'Position', ...@@ -29,10 +29,10 @@ fig = figure; FIGNAME = ['ZF_transport_drphi','_',PARAMS];set(gcf, 'Position',
lstyle = line_styles(1); lstyle = line_styles(1);
% plt = @(x_) mean(x_,1); % plt = @(x_) mean(x_,1);
plt = @(x_) x_(1,:); plt = @(x_) x_(1,:);
plot(Ts3D,plt(shear_maxx_maxy),'DisplayName','$\max_{x,y}(s_\phi)$'); hold on; plot(Ts3D,plt(shear_maxx_maxy),'DisplayName','$\max_{x,y}(\partial^2_x\phi)$'); hold on;
plot(Ts3D,plt(shear_maxx_avgy),'DisplayName','$\max_{x}\langle s_\phi\rangle_y$'); hold on; plot(Ts3D,plt(shear_maxx_avgy),'DisplayName','$\max_{x}\langle \partial^2_x\phi\rangle_y$'); hold on;
plot(Ts3D,plt(shear_avgx_maxy),'DisplayName','$\max_{y}\langle s_\phi\rangle_x$'); hold on; plot(Ts3D,plt(shear_avgx_maxy),'DisplayName','$\max_{y}\langle \partial^2_x\phi\rangle_x$'); hold on;
plot(Ts3D,plt(shear_avgx_avgy),'DisplayName','$\langle s_\phi\rangle_{x,y}$'); hold on; plot(Ts3D,plt(shear_avgx_avgy),'DisplayName','$\langle \partial^2_x\phi\rangle_{x,y}$'); hold on;
plot(Ts3D(its2D:ite2D),ones(ite2D-its2D+1,1)*shear_infty_avg, '-k',... plot(Ts3D(its2D:ite2D),ones(ite2D-its2D+1,1)*shear_infty_avg, '-k',...
'DisplayName',['$s^{\infty} = $',num2str(shear_infty_avg),'$\pm$',num2str(shear_infty_std)]); 'DisplayName',['$s^{\infty} = $',num2str(shear_infty_avg),'$\pm$',num2str(shear_infty_std)]);
ylim([0,shear_infty_avg*5.0]); xlim([Ts0D(1),Ts0D(end)]); ylim([0,shear_infty_avg*5.0]); xlim([Ts0D(1),Ts0D(end)]);
......
matlab/plots/plot_space_time_diagrams.m
+ 3
− 3
View file @ 01dcbfc3
...@@ -4,9 +4,9 @@ trange = itstart:itend; ...@@ -4,9 +4,9 @@ trange = itstart:itend;
[TY,TX] = meshgrid(x,Ts3D(trange)); [TY,TX] = meshgrid(x,Ts3D(trange));
fig = figure; FIGNAME = ['space_time','_',PARAMS];set(gcf, 'Position', [100, 100, 1200, 600]) fig = figure; FIGNAME = ['space_time','_',PARAMS];set(gcf, 'Position', [100, 100, 1200, 600])
subplot(211) subplot(211)
% pclr = pcolor(TX,TY,squeeze(mean(dens_i(:,:,trange).*dyphi(:,:,trange),2))'); set(pclr, 'edgecolor','none'); colorbar; pclr = pcolor(TX,TY,squeeze(mean(dens_i(:,:,1,trange).*dyphi(:,:,1,trange),2))'); set(pclr, 'edgecolor','none'); colorbar;
pclr = pcolor(TX,TY,squeeze(mean(ni00(:,:,1,trange).*dyphi(:,:,1,trange),2))'); set(pclr, 'edgecolor','none',... % pclr = pcolor(TX,TY,squeeze(mean(ni00(:,:,1,trange).*dyphi(:,:,1,trange),2))'); set(pclr, 'edgecolor','none',...
'DisplayName','$\langle n_i\partial_z\phi\rangle_z$'); colorbar; % 'DisplayName','$\langle n_i\partial_z\phi\rangle_z$'); colorbar;
shading interp shading interp
colormap hot; colormap hot;
% caxis([0.0,0.05*max(max(mean(ni00(:,:,its2D:ite2D).*dyphi(:,:,1,its2D:ite2D),2)))]); % caxis([0.0,0.05*max(max(mean(ni00(:,:,its2D:ite2D).*dyphi(:,:,1,its2D:ite2D),2)))]);
......
wk/analysis_3D.m
+ 14
− 9
View file @ 01dcbfc3
...@@ -6,7 +6,13 @@ outfile =''; ...@@ -6,7 +6,13 @@ outfile ='';
outfile =''; outfile ='';
outfile =''; outfile ='';
outfile =''; outfile ='';
outfile ='simulation_A/cw_SGGK_mu_1e-2'; outfile ='';
outfile ='';
outfile ='HD_study/200x100_L_200_P_2_J_1_eta_0.6_nu_1e+00_DGGK_CLOS_0_mu_0e+00';
% outfile ='simulation_B/cw_DGGK'; % to analyse
% outfile ='simulation_B/cw_SGGK_mu_1e-1';
% outfile ='simulation_B/cw_DGGK';
% outfile ='simulation_A/cw_DGGK_eta_0.5';
% outfile ='simulation_A/LBDK_damping_150x75_L_100_P_4_J_2_eta_0.6_nu_1e-01_SGGK_mu_0e+00'; % outfile ='simulation_A/LBDK_damping_150x75_L_100_P_4_J_2_eta_0.6_nu_1e-01_SGGK_mu_0e+00';
BASIC.RESDIR = ['../results/',outfile,'/']; BASIC.RESDIR = ['../results/',outfile,'/'];
BASIC.MISCDIR = ['/misc/HeLaZ_outputs/results/',outfile,'/']; BASIC.MISCDIR = ['/misc/HeLaZ_outputs/results/',outfile,'/'];
...@@ -17,15 +23,14 @@ else% Marconi results ...@@ -17,15 +23,14 @@ else% Marconi results
outfile =''; outfile ='';
outfile =''; outfile ='';
outfile =''; outfile ='';
outfile =''; outfile ='/marconi_scratch/userexternal/ahoffman/HeLaZ/results/simulation_B/300x150_L_120_P_8_J_4_eta_0.6_nu_5e-01_SGGK_mu_0e+00/out.txt';
outfile ='';
BASIC.RESDIR = ['../',outfile(46:end-8),'/']; BASIC.RESDIR = ['../',outfile(46:end-8),'/'];
BASIC.MISCDIR = ['/misc/HeLaZ_outputs/',outfile(46:end-8),'/']; BASIC.MISCDIR = ['/misc/HeLaZ_outputs/',outfile(46:end-8),'/'];
end end
%% Load the results %% Load the results
% Load outputs from jobnummin up to jobnummax % Load outputs from jobnummin up to jobnummax
JOBNUMMIN = 06; JOBNUMMAX = 20; JOBNUMMIN = 00; JOBNUMMAX = 20;
% JOBNUMMIN = 07; JOBNUMMAX = 20; % For CO damping sim A % JOBNUMMIN = 07; JOBNUMMAX = 20; % For CO damping sim A
compile_results %Compile the results from first output found to JOBNUMMAX if existing compile_results %Compile the results from first output found to JOBNUMMAX if existing
...@@ -44,13 +49,13 @@ end ...@@ -44,13 +49,13 @@ end
if 1 if 1
%% Space time diagramm (fig 11 Ivanov 2020) %% Space time diagramm (fig 11 Ivanov 2020)
TAVG_0 = 1.4e4; TAVG_1 = 1.5e4; % Averaging times duration TAVG_0 = 1.2e4; TAVG_1 = 1.3e4; % Averaging times duration
plot_radial_transport_and_shear plot_radial_transport_and_shear
end end
if 0 if 0
%% Space time diagramms %% Space time diagramms
cmax = 0.0001 % max of the colorbar for transport cmax = 0.00001 % max of the colorbar for transport
tstart = 0; tend = Ts3D(end); % time window tstart = 0; tend = Ts3D(end); % time window
plot_space_time_diagrams plot_space_time_diagrams
end end
...@@ -72,7 +77,7 @@ end ...@@ -72,7 +77,7 @@ end
if 0 if 0
%% MOVIES %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %% MOVIES %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Options % Options
t0 =10950; iz = 1; ix = 1; iy = 1; t0 =0; iz = 1; ix = 1; iy = 1;
skip_ =1; DELAY = 2e-3*skip_; skip_ =1; DELAY = 2e-3*skip_;
[~, it03D] = min(abs(Ts3D-t0)); FRAMES_3D = it03D:skip_:numel(Ts3D); [~, it03D] = min(abs(Ts3D-t0)); FRAMES_3D = it03D:skip_:numel(Ts3D);
[~, it05D] = min(abs(Ts5D-t0)); FRAMES_5D = it05D:skip_:numel(Ts5D); [~, it05D] = min(abs(Ts5D-t0)); FRAMES_5D = it05D:skip_:numel(Ts5D);
...@@ -88,7 +93,7 @@ INTERP = 0; T = Ts3D; FRAMES = FRAMES_3D; ...@@ -88,7 +93,7 @@ INTERP = 0; T = Ts3D; FRAMES = FRAMES_3D;
% FIELD = temp_i-Z_T_i; NAME = 'Ti_NZ';FIELDNAME = 'T_i^{NZ}'; % FIELD = temp_i-Z_T_i; NAME = 'Ti_NZ';FIELDNAME = 'T_i^{NZ}';
% FIELD = ne00; NAME = 'ne00'; FIELDNAME = 'n_e^{00}'; % FIELD = ne00; NAME = 'ne00'; FIELDNAME = 'n_e^{00}';
% FIELD = ni00; NAME = 'ni00'; FIELDNAME = 'n_i^{00}'; % FIELD = ni00; NAME = 'ni00'; FIELDNAME = 'n_i^{00}';
% FIELD = phi; NAME = 'phi'; FIELDNAME = '\phi'; FIELD = phi; NAME = 'phi'; FIELDNAME = '\phi';
% FIELD = Gamma_x; NAME = 'Gamma_x'; FIELDNAME = '\Gamma_x'; % FIELD = Gamma_x; NAME = 'Gamma_x'; FIELDNAME = '\Gamma_x';
% Sliced % Sliced
...@@ -129,7 +134,7 @@ FIELD = phi; FNAME = 'phi'; FIELDLTX = '\phi'; ...@@ -129,7 +134,7 @@ FIELD = phi; FNAME = 'phi'; FIELDLTX = '\phi';
% FIELD = dens_e-Z_n_e-(Z_phi-phi); FNAME = 'Non_adiab_part'; FIELDLTX = 'n_e^{NZ}-\phi^{NZ}'; % FIELD = dens_e-Z_n_e-(Z_phi-phi); FNAME = 'Non_adiab_part'; FIELDLTX = 'n_e^{NZ}-\phi^{NZ}';
% Chose when to plot it % Chose when to plot it
tf = 11000:50:11300; tf = 128:1:133;
% Sliced % Sliced
ix = 1; iy = 1; iz = 1; ix = 1; iy = 1; iz = 1;
......
wk/continue_multiple_runs_marconi.m
+ 3
− 4
View file @ 01dcbfc3
%% Paste the list of continue_run calls %% Paste the list of continue_run calls
continue_run('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/simulation_B/300x150_L_120_P_8_J_4_eta_0.6_nu_5e-01_SGGK_mu_0e+00/out.txt')
continue_run('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_7e-02_SGGK_mu_0e+00/out.txt')
%% Functions to modify preexisting fort.90 input file and launch on marconi %% Functions to modify preexisting fort.90 input file and launch on marconi
function [] = continue_run(outfilename) function [] = continue_run(outfilename)
...@@ -51,7 +50,7 @@ function [] = continue_run(outfilename) ...@@ -51,7 +50,7 @@ function [] = continue_run(outfilename)
A{39} = [' job2load = ',num2str(J2L)]; A{39} = [' job2load = ',num2str(J2L)];
disp(A{39}) disp(A{39})
% Change time step % Change time step
A{3} = [' dt = 0.005']; A{3} = [' dt = 0.01'];
% Increase endtime % Increase endtime
A{4} = [' tmax = 20000']; A{4} = [' tmax = 20000'];
% Change collision operator % Change collision operator
...@@ -63,7 +62,7 @@ function [] = continue_run(outfilename) ...@@ -63,7 +62,7 @@ function [] = continue_run(outfilename)
% change HD % change HD
line_= A{47}; line_= A{47};
mu_old = str2num(line_(13:end)); mu_old = str2num(line_(13:end));
A{47} = [' mu = ',num2str(mu_old)]; A{47} = [' mu = ',num2str(0)];
% change L % change L
line_= A{14}; line_= A{14};
L_old = str2num(line_(12:end)); L_old = str2num(line_(12:end));
......
wk/linear_study.m
+ 5
− 5
View file @ 01dcbfc3
for CO = [1] for CO = [2]
RUN = 1; % To run or just to load RUN = 1; % To run or just to load
addpath(genpath('../matlab')) % ... add addpath(genpath('../matlab')) % ... add
default_plots_options default_plots_options
...@@ -7,12 +7,12 @@ default_plots_options ...@@ -7,12 +7,12 @@ default_plots_options
CLUSTER.TIME = '99:00:00'; % allocation time hh:mm:ss CLUSTER.TIME = '99:00:00'; % allocation time hh:mm:ss
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS %% PHYSICAL PARAMETERS
NU = 1.0; % Collision frequency NU = 0.1; % Collision frequency
TAU = 1.0; % e/i temperature ratio TAU = 1.0; % e/i temperature ratio
ETAB = 1.0; ETAB = 1.0;
ETAN = 1/0.6; % Density gradient ETAN = 1/0.6; % Density gradient
ETAT = 0.0; % Temperature gradient ETAT = 0.0; % Temperature gradient
NU_HYP = 0.0; % Hyperdiffusivity coefficient NU_HYP = 3.0; % Hyperdiffusivity coefficient
LAMBDAD = 0.0; LAMBDAD = 0.0;
NOISE0 = 1.0e-5; % Init noise amplitude NOISE0 = 1.0e-5; % Init noise amplitude
BCKGD0 = 0.0; % Init background BCKGD0 = 0.0; % Init background
...@@ -111,8 +111,8 @@ for i = 1:Nparam ...@@ -111,8 +111,8 @@ for i = 1:Nparam
[~,itend] = min(abs(Ts3D-tend)); [~,itend] = min(abs(Ts3D-tend));
gamma_Ni00(i,ikx) = (LinearFit_s(Ts3D(itstart:itend)',(squeeze(abs(Ni00(ikx,1,1,itstart:itend)))))); gamma_Ni00(i,ikx) = (LinearFit_s(Ts3D(itstart:itend)',(squeeze(abs(Ni00(ikx,1,1,itstart:itend))))));
gamma_phi (i,ikx) = (LinearFit_s(Ts3D(itstart:itend)',(squeeze(abs(PHI (ikx,1,1,itstart:itend)))))); gamma_phi (i,ikx) = (LinearFit_s(Ts3D(itstart:itend)',(squeeze(abs(PHI (ikx,1,1,itstart:itend))))));
Ni00_ST(i,ikx,:) = squeeze((Ni00(ikx,1,1,1:TMAX/SPS3D))); % Ni00_ST(i,ikx,:) = squeeze((Ni00(ikx,1,1,1:TMAX/SPS3D)));
PHI_ST(i,ikx,:) = squeeze((PHI (ikx,1,1,1:TMAX/SPS3D))); % PHI_ST(i,ikx,:) = squeeze((PHI (ikx,1,1,1:TMAX/SPS3D)));
end end
tend = Ts5D(end); tstart = 0.4*tend; tend = Ts5D(end); tstart = 0.4*tend;
[~,itstart] = min(abs(Ts5D-tstart)); [~,itstart] = min(abs(Ts5D-tstart));
......
wk/load_multiple_outputs_marconi.m
+ 4
− 8
View file @ 01dcbfc3
addpath(genpath('../matlab')) % ... add addpath(genpath('../matlab')) % ... add
%% Paste the list of simulation results to load %% Paste the list of simulation results to load
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_5e-01_SGGK_mu_3e-02/out.txt') load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/simulation_A/300x150_L_120_P_8_J_4_eta_0.6_nu_1e-01_DGGK_mu_0e+00/out.txt')
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_1e-01_SGGK_mu_3e-02/out.txt') load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/simulation_A/300x150_L_120_P_8_J_4_eta_0.6_nu_1e-01_SGGK_mu_0e+00/out.txt')
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_5e-01_SGGK_mu_0e+00/out.txt') load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/simulation_B/300x150_L_120_P_8_J_4_eta_0.6_nu_5e-01_DGGK_mu_0e+00/out.txt')
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_1e-01_SGGK_mu_0e+00/out.txt') load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/simulation_B/300x150_L_120_P_8_J_4_eta_0.6_nu_5e-01_SGGK_mu_0e+00/out.txt')
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_2e-01_SGGK_mu_0e+00/out.txt')
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_7e-02_SGGK_mu_0e+00/out.txt')
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_1e-02_SGGK_mu_3e-02/out.txt')
load_marconi('/marconi_scratch/userexternal/ahoffman/HeLaZ/results/HD_study/150x75_L_100_P_4_J_2_eta_0.6_nu_1e+00_SGGK_mu_0e+00/out.txt')
wk/marconi_run.m
+ 9
− 8
View file @ 01dcbfc3
...@@ -18,28 +18,28 @@ NP_P = 2; % MPI processes along p ...@@ -18,28 +18,28 @@ NP_P = 2; % MPI processes along p
NP_KX = 24; % MPI processes along kx NP_KX = 24; % MPI processes along kx
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS %% PHYSICAL PARAMETERS
NU = 1.0; % Collision frequency NU = 0.5; % Collision frequency
ETAN = 1.0/0.6; % Density gradient drive (R/Ln) ETAN = 1.0/0.6; % Density gradient drive (R/Ln)
NU_HYP = 0.0; NU_HYP = 0.0;
%% GRID PARAMETERS %% GRID PARAMETERS
N = 150; % Frequency gridpoints (Nkx = N/2) N = 300; % Frequency gridpoints (Nkx = N/2)
L = 100; % Size of the squared frequency domain L = 120; % Size of the squared frequency domain
Nz = 1; % number of perpendicular planes (parallel grid) Nz = 1; % number of perpendicular planes (parallel grid)
q0 = 1.0; % q factor () q0 = 1.0; % q factor ()
shear = 0.0; % magnetic shear shear = 0.0; % magnetic shear
eps = 0.0; % inverse aspect ratio eps = 0.0; % inverse aspect ratio
P = 4; P = 8;
J = 2; J = 4;
%% TIME PARAMETERS %% TIME PARAMETERS
TMAX = 10000; % Maximal time unit TMAX = 10000; % Maximal time unit
DT = 5e-3; % Time step DT = 5e-3; % Time step
SPS0D = 1; % Sampling per time unit for profiler SPS0D = 1; % Sampling per time unit for profiler
SPS2D = 1; % Sampling per time unit for 2D arrays SPS2D = 1; % Sampling per time unit for 2D arrays
SPS3D = 1/2; % Sampling per time unit for 3D arrays SPS3D = 1/2; % Sampling per time unit for 3D arrays
SPS5D = 1/500; % Sampling per time unit for 5D arrays SPS5D = 1/100; % Sampling per time unit for 5D arrays
SPSCP = 0; % Sampling per time unit for checkpoints/10 SPSCP = 0; % Sampling per time unit for checkpoints/10
RESTART = 1; % To restart from last checkpoint RESTART = 1; % To restart from last checkpoint
JOB2LOAD= 3; JOB2LOAD= 0;
%% OPTIONS AND NAMING %% OPTIONS AND NAMING
% Collision operator % Collision operator
% (0 : L.Bernstein, 1 : Dougherty, 2: Sugama, 3 : Pitch angle ; +/- for GK/DK) % (0 : L.Bernstein, 1 : Dougherty, 2: Sugama, 3 : Pitch angle ; +/- for GK/DK)
...@@ -47,7 +47,7 @@ CO = 2; ...@@ -47,7 +47,7 @@ CO = 2;
CLOS = 0; % Closure model (0: =0 truncation) CLOS = 0; % Closure model (0: =0 truncation)
NL_CLOS = -1; % nonlinear closure model (-2: nmax = jmax, -1: nmax = jmax-j, >=0 : nmax = NL_CLOS) NL_CLOS = -1; % nonlinear closure model (-2: nmax = jmax, -1: nmax = jmax-j, >=0 : nmax = NL_CLOS)
% SIMID = 'test_3D_marconi'; % Name of the simulation % SIMID = 'test_3D_marconi'; % Name of the simulation
SIMID = 'HD_study'; % Name of the simulation SIMID = 'simulation_B'; % Name of the simulation
% SIMID = ['v3.0_P_',num2str(P),'_J_',num2str(J)]; % Name of the simulation % SIMID = ['v3.0_P_',num2str(P),'_J_',num2str(J)]; % Name of the simulation
NON_LIN = 1; % activate non-linearity (is cancelled if KXEQ0 = 1) NON_LIN = 1; % activate non-linearity (is cancelled if KXEQ0 = 1)
% INIT options % INIT options
...@@ -79,6 +79,7 @@ HD_CO = 0.5; % Hyper diffusivity cutoff ratio ...@@ -79,6 +79,7 @@ HD_CO = 0.5; % Hyper diffusivity cutoff ratio
% kmaxcut = 2.5; % kmaxcut = 2.5;
MU = NU_HYP/(HD_CO*kmax)^4; % Hyperdiffusivity coefficient MU = NU_HYP/(HD_CO*kmax)^4; % Hyperdiffusivity coefficient
NOISE0 = 1.0e-5; NOISE0 = 1.0e-5;
BCKGD0 = 0.0; % Init background
TAU = 1.0; % e/i temperature ratio TAU = 1.0; % e/i temperature ratio
ETAT = 0.0; % Temperature gradient ETAT = 0.0; % Temperature gradient
ETAB = 1.0; % Magnetic gradient (1.0 to set R=LB) ETAB = 1.0; % Magnetic gradient (1.0 to set R=LB)
......
wk/open_figure_script.m
+ 1
− 1
View file @ 01dcbfc3
...@@ -15,7 +15,7 @@ simname_ = fname_(54:end-8); ...@@ -15,7 +15,7 @@ simname_ = fname_(54:end-8);
% simname_ = ''; % simname_ = '';
% simname_ = ''; % simname_ = '';
% simname_ = ''; % simname_ = '';
simname_ = 'simulation_A/DGGK_damping_150x75_L_100_P_4_J_2_eta_0.6_nu_1e-01_SGGK_mu_0e+00'; simname_ = 'simulation_A/cw_SGGK_mu_1e-2';
......
wk/plot_cosol_mat.m
+ 2
− 6
View file @ 01dcbfc3
...@@ -92,12 +92,8 @@ subplot(224) ...@@ -92,12 +92,8 @@ subplot(224)
%% Single eigenvalue analysis %% Single eigenvalue analysis
% mat_file_name = '/home/ahoffman/HeLaZ/iCa/gk_coulomb_P_2_J_1_N_1_kpm_4.0_NFLR_5.h5'; % mat_file_name = '/home/ahoffman/cosolver/gk.coulomb_6_3_NFLR_8_kp_4_bjf/scanfiles_00000/self.0.h5';
% mat_file_name = '/home/ahoffman/HeLaZ/iCa/gk_coulomb_P_6_J_3_N_150_kpm_8.0_NFLR_8.h5'; mat_file_name = '/home/ahoffman/cosolver/gk.coulomb_6_3_NFLR_8_kp_4_new_Tljpmf_fort_bjf/scanfiles_00000/self.0.h5';
% mat_file_name = '/home/ahoffman/cosolver/gk.coulomb.NFLR/k.4/self.NFLR.8.0.h5';
% mat_file_name = '/home/ahoffman/cosolver/gk.coulomb_6_3_NFLR_8_kp_4_npiflr_8_sigma_3e-3/scanfiles_00000/self.0.h5';
% mat_file_name = '/home/ahoffman/cosolver/gk.coulomb_6_3_NFLR_8_kp_4_npiflr_0_sigma_5e-4/scanfiles_00000/self.0.h5';
mat_file_name = '/home/ahoffman/cosolver/gk.coulomb_6_3_NFLR_8_kp_4_bjf/scanfiles_00000/self.0.h5';
matidx = 74; matidx = 74;
matidx = sprintf('%5.5i',matidx);disp(matidx); matidx = sprintf('%5.5i',matidx);disp(matidx);
......
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