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Commit 7ed60f68 authored by Antoine Cyril David Hoffmann's avatar Antoine Cyril David Hoffmann :seedling:
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wk/paper_2_scripts_and_results/fast_analysis.m 0 → 100644
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gyacomodir = pwd; gyacomodir = gyacomodir(1:end-2); % get code directory
addpath(genpath([gyacomodir,'matlab'])) % ... add
addpath(genpath([gyacomodir,'matlab/plot'])) % ... add
addpath(genpath([gyacomodir,'matlab/compute'])) % ... add
addpath(genpath([gyacomodir,'matlab/load'])) % ... add
default_plots_options
% Partition of the computer where the data have to be searched
PARTITION = '/misc/gyacomo23_outputs/';
% PARTITION = '/home/ahoffman/gyacomo/';
%% Tests
% resdir = 'test_stepon_AA/CBC_stepon_AA';
% resdir = 'test_stepon_AA/CBC_no_stepon_AA'; % No clear conclusions
%% CBC benchmark
% resdir = 'paper_2_GYAC23/CBC/3x2x128x64x24';
% resdir = 'paper_2_GYAC23/CBC/3x2x128x64x24_nu_5e-2';
% resdir = 'paper_2_GYAC23/CBC/5x3x128x64x24';
% resdir = 'paper_2_GYAC23/CBC/7x4x128x64x24';
% resdir = 'paper_2_GYAC23/CBC/21x6x192x96x24';
%% low precision kT scan
% resdir = 'paper_2_GYAC23/local_runs/1x2x64x48x16/CBC';
% resdir = 'paper_2_GYAC23/local_runs/1x2x64x48x16/CBC_dp';
% resdir = 'paper_2_GYAC23/local_runs/1x2x128x64x16/CBC';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/5x2x64x48x16/kT_3.5';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/5x2x64x48x16/kT_4.0';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/5x2x64x48x16/kT_4.5';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/5x2x64x48x16/kT_5.3';
% resdir = 'paper_2_GYAC23/local_runs/5x2x64x48x16/CBC';
% resdir = 'paper_2_GYAC23/local_runs/5x2x64x48x16/CBC_noise_init';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/9x2x64x48x16/kT_3.5';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/9x2x64x48x16/kT_4.0';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/9x2x64x48x16/kT_4.5';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/9x2x64x48x16/kT_5.3';
% resdir = 'paper_2_GYAC23/local_runs/9x2x64x48x16/CBC';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/11x2x64x48x16/kT_4.0';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/11x2x64x48x16/kT_4.5';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/11x2x64x48x16/kT_5.3';
% resdir = 'paper_2_GYAC23/local_runs/nu=0.05/11x2x64x48x16/CBC';
% resdir = 'paper_2_GYAC23/local_runs/11x2x64x48x16/CBC';
%% Collision scan
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_CBC/7x2x64x48x16/nu_0.1';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_CBC/9x2x64x48x16/nu_0.1';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_CBC/9x2x64x48x16/nu_0.1';
% resdir = 'paper_2_GYAC23/collision_study/nuDGGK_scan_kT_5.3/9x5x128x64x24/nu_0.5';
% resdir = 'paper_2_GYAC23/collision_study/nuDGGK_scan_kT_5.3/5x3x128x64x24/nu_0.5';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/9x5x128x64x24/nu_0.5';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/9x5x128x64x24_Lx200/nu_0.5';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_kT_5.3/9x5x128x64x24/nu_0.005';
% resdir = 'paper_2_GYAC23/collision_study/nuDGGK_scan_kT_5.3/11x6x192x96x24/nu_0.1';
% resdir = 'paper_2_GYAC23/collision_study/nuDGGK_scan_kT_5.3/9x5x192x96x24/nu_0.2';
% resdir = 'paper_2_GYAC23/collision_study/nuDGGK_scan_kT_5.3/17x9x192x96x24/nu_0.2';
% resdir = 'paper_2_GYAC23/collision_study/nuDGGK_scan_kT_5.3/17x9x192x96x24/nu_0.02';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/17x9x192x96x24/nu_0.02';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/9x5x192x96x24/nu_0.2';
% resdir = 'paper_2_GYAC23/collision_study/nuDGGK_scan_kT_5.3/17x9x192x96x24/continue_SG_nu_0.02';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/5x3x192x96x24/nu_0.02';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/9x5x192x96x24/nu_0.02';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/17x9x192x96x24/nu_0.02';
% resdir = 'paper_2_GYAC23/collision_study/nuSGGK_scan_kT_5.3/17x9x192x96x24/nu_0.005';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_kT_5.3/5x3x192x96x24/nu_0.005';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_kT_5.3/9x5x192x96x24/nu_0.005';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_kT_5.3/17x9x128x64x24/nu_0.005';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_kT_5.3/17x9x128x64x24_large_box/nu_0.005';
% resdir = 'paper_2_GYAC23/collision_study/nuLDGK_scan_kT_5.3/17x9x128x64x24_ckcut_0.8/nu_0.005';
%% kT eff study
% resdir = 'paper_2_GYAC23/kT_eff_study/1x3x128x64x24_kT_3.0/Lx120';
% resdir = 'paper_2_GYAC23/kT_eff_study/1x3x128x64x24_kT_3.0/Lx240';
% resdir = 'paper_2_GYAC23/kT_eff_study/3x3x128x64x24_kT_3.4/Lx120';
% resdir = 'paper_2_GYAC23/kT_eff_study/3x3x128x64x24_kT_3.4/Lx240';
% resdir = 'paper_2_GYAC23/kT_eff_study/5x3x128x64x24_kT_3.5';
% resdir = 'paper_2_GYAC23/kT_eff_study/7x3x128x64x24_kT_3.6/truncation';
% resdir = 'paper_2_GYAC23/kT_eff_study/7x3x128x64x24_kT_3.6/dmax';
%% dev
PARTITION='';
% resdir = '/home/ahoffman/gyacomo/testcases/zpinch_3D';
% resdir = '/home/ahoffman/gyacomo/results/dev/3D_kine_zpinch_test';
%% CBC benchmark
% resdir = '/misc/gyacomo23_outputs/paper_2_GYAC23/kT_scan_nu_1e-3/3x2x128x64x24/kT_7.0';
% resdir = '/misc/gyacomo23_outputs/paper_2_GYAC23/kT_scan_nu_1e-3/5x3x128x64x24/kT_7.0';
% resdir = '/misc/gyacomo23_outputs/paper_2_GYAC23/kT_scan_nu_1e-3/9x5x128x64x24/kT_7.0';
% resdir = '/misc/gyacomo23_outputs/paper_2_GYAC23/kT_scan_nu_1e-3/17x9x128x64x24/kT_7.0';
% resdir = '/misc/gyacomo23_outputs/paper_2_GYAC23/kT_scan_nu_1e-3/31x16x128x64x24/kT_7.0';
%% Paper 3
resdir = '/misc/gyacomo23_outputs/paper_3_GYAC23/CBC_kine';
%%
J0 = 00; J1 = 20;
% Load basic info (grids and time traces)
DATADIR = [PARTITION,resdir,'/'];
data = {};
data = compile_results_low_mem(data,DATADIR,J0,J1);
if 1
%% Plot transport and phi radial profile
[data.PHI, data.Ts3D] = compile_results_3D(DATADIR,J0,J1,'phi');
options.TAVG_0 = 100;
options.TAVG_1 = 1000;
options.NCUT = 5; % Number of cuts for averaging and error estimation
options.NMVA = 1; % Moving average for time traces
% options.ST_FIELD = '\Gamma_x'; % chose your field to plot in spacetime diag (e.g \phi,v_x,G_x)
options.ST_FIELD = '\phi'; % chose your field to plot in spacetime diag (e.g \phi,v_x,G_x)
options.INTERP = 0;
options.RESOLUTION = 256;
plot_radial_transport_and_spacetime(data,options);
end
if 0
%% MOVIES %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Options
% [data.PHI, data.Ts3D] = compile_results_3D(DATADIR,J0,J1,'phi');
% [data.Na00, data.Ts3D] = compile_results_3Da(DATADIR,J0,J1,'Na00');
% data.Ni00 = reshape(data.Na00(1,:,:,:,:),data.grids.Nky,data.grids.Nkx,data.grids.Nz,numel(data.Ts3D));
options.INTERP = 1;
options.POLARPLOT = 0;
options.NAME = '\phi';
% options.NAME = '\phi^{NZ}';
% options.NAME = '\omega_z';
% options.NAME = 'N_i^{00}';
% options.NAME = 's_{Ey}';
% options.NAME = 'n_i^{NZ}';
% options.NAME = 'Q_x';
% options.NAME = 'n_i';
% options.NAME = 'n_i-n_e';
options.PLAN = 'yz';
% options.NAME = 'f_i';
% options.PLAN = 'sx';
options.COMP = 'avg';
% options.TIME = data.Ts5D(end-30:end);
options.TIME = data.Ts3D(1:1:end);
% options.TIME = [0:1500];
data.EPS = 0.1;
data.a = data.EPS * 2000;
options.RESOLUTION = 256;
create_film(data,options,'.gif')
end
if 0
%% fields snapshots
% Options
[data.Na00, data.Ts3D] = compile_results_3Da(DATADIR,J0,J1,'Na00');
[data.PHI, data.Ts3D] = compile_results_3D(DATADIR,J0,J1,'phi');
data.Ni00 = reshape(data.Na00(1,:,:,:,:),data.grids.Nky,data.grids.Nkx,data.grids.Nz,numel(data.Ts3D));
options.INTERP = 0;
options.POLARPLOT = 0;
options.AXISEQUAL = 0;
options.NORMALIZE = 0;
% options.NAME = 'N_i^{00}';
options.NAME = '\phi';
options.PLAN = 'kxky';
options.COMP = 'avg';
options.TIME = [0:0.02:0.14];
% options.TIME = data.Ts3D(1:2:end);
options.RESOLUTION = 256;
fig = photomaton(data,options);
% save_figure(data,fig)
end
if 0
%% Performance profiler
profiler(data)
end
if 1
%% Hermite-Laguerre spectrum
[data.Napjz, data.Ts3D] = compile_results_3Da(DATADIR,J0,J1,'Napjz');
% [data.Napjz, data.Ts3D] = compile_results_3D(DATADIR,J0,J1,'Nipjz');
options.ST = 1;
options.NORMALIZED = 0;
options.LOGSCALE = 1;
options.FILTER = 0; %filter the 50% time-average of the spectrum from
options.TAVG_2D = 0; %Show a 2D plot of the modes, 50% time averaged
options.TAVG_2D_CTR= 0; %make it contour plot
fig = show_moments_spectrum(data,options);
end
if 0
%% Mode evolution
[data.PHI, data.Ts3D] = compile_results_3D(DATADIR,J0,J1,'phi');
options.NORMALIZED = 0;
options.TIME = [000:9000];
options.KX_TW = [30 40]; %kx Growth rate time window
options.KY_TW = [10 20]; %ky Growth rate time window
options.NMA = 1;
options.NMODES = 800;
options.iz = 'avg'; % avg or index
options.ik = 1; % sum, max or index
options.fftz.flag = 0;
fig = mode_growth_meter(data,options);
% save_figure(data,fig,'.png')
end
if 0
%% Study singular values
[data.SV_ky_pj, data.Ts2D] = compile_results_2D(DATADIR,J0,J1,'sv_ky_pj');
nSV = data.grids.Np * data.grids.Nj;
colors_ = jet(nSV);
figure
for i = 1:nSV
sv = squeeze(data.SV_ky_pj(i,:));
semilogy(data.Ts2D,sv,...
'color',colors_(i,:),'DisplayName',['SV ',num2str(i)]);hold on
end
legend('show');
end
\ No newline at end of file
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