scripts update

Makefile

matlab/compile_results.m

matlab/load_params.m

matlab/photomaton.m

matlab/process_field.m

matlab/setup.m

matlab/write_fort90.m

wk/analysis_3D.m

wk/benchmark_linear_1D_entropy_mode.m

wk/cyclone_test_case.m

wk/linear_1D_damping.m

wk/linear_1D_entropy_mode.m

wk/local_run.m

wk/marconi_run.m

wk/mode_growth_meter.m

wk/shearless_linear_fluxtube.m