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Commit 071cd025 authored by Olivier Sauter's avatar Olivier Sauter Committed by Antoine Merle
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start adding other simple reads options for futils outputs

parent cd80d31f
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1 merge request!162Fix time out ids
......@@ -2,6 +2,8 @@ function h5_struct = read_hdf5_simple(ids_h5_file,varargin)
%
% h5_struct = read_hdf5_simple(ids_h5_file,varargin)
%
% varargin{1}: 'imas' (default), 'futils' (for ogyropsi files e.g.) type of hdf5
%
% on spcimas need to do:
% export LD_PRELOAD_previous=$LD_PRELOAD
% unset LD_PRELOAD
......@@ -15,21 +17,31 @@ catch
error('could not hdf5info(file)')
end
[a1,ids_name,a3]=fileparts(aa.Filename);
h5_struct.ids_name = ids_name;
h5_struct.Filename = aa.GroupHierarchy.Filename;
file_type = 'imas',
if nargin>=2 && ~isempty(varargin{1})
file_type = varargin{1}
end
switch file_type
case {'futils', 'standard'}
keyboard
otherwise
[a1,ids_name,a3]=fileparts(aa.Filename);
h5_struct.ids_name = ids_name;
h5_struct.Filename = aa.GroupHierarchy.Filename;
if isfield(aa.GroupHierarchy.Groups,'Datasets')
for i=1:numel(aa.GroupHierarchy.Groups.Datasets)
if strcmp(aa.GroupHierarchy.Groups.Datasets(i).Name(1),'/')
istart = 2;
if isfield(aa.GroupHierarchy.Groups,'Datasets')
for i=1:numel(aa.GroupHierarchy.Groups.Datasets)
if strcmp(aa.GroupHierarchy.Groups.Datasets(i).Name(1),'/')
istart = 2;
else
istart = 1;
end
struct_flatname = regexprep(lower(regexprep(aa.GroupHierarchy.Groups.Datasets(i).Name(istart:end),'[/&[]]','.')),'\.+','_');
struct_flatname = regexprep(struct_flatname,[h5_struct.ids_name '_'],'');
h5_struct.(struct_flatname) = h5read(aa.GroupHierarchy.Groups.Datasets(i).Filename,aa.GroupHierarchy.Groups.Datasets(i).Name);
end
else
istart = 1;
disp(sprintf('\n*************\nno Datasets\n*************\n'));
end
struct_flatname = regexprep(lower(regexprep(aa.GroupHierarchy.Groups.Datasets(i).Name(istart:end),'[/&[]]','.')),'\.+','_');
struct_flatname = regexprep(struct_flatname,[h5_struct.ids_name '_'],'');
h5_struct.(struct_flatname) = h5read(aa.GroupHierarchy.Groups.Datasets(i).Filename,aa.GroupHierarchy.Groups.Datasets(i).Name);
end
else
disp(sprintf('\n*************\nno Datasets\n*************\n'));
end
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