adapt ppb110 script

wk/ppb110_run.m

@@ -5,7 +5,9 @@ addpath(genpath('../matlab')) % ... add
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %% CLUSTER PARAMETERS
 CLUSTER.TIME  = '01:00:00';   % allocation time hh:mm:ss
-CLUSTER.NODES = '8';          % MPI process
+CLUSTER.NODES = '1';        % MPI process
+CLUSTER.CPUPT = '1';        % CPU per task
+CLUSTER.NTPN  = '4';       % N tasks per node
 CLUSTER.MEM   = '2000';       % Memory
 CLUSTER.JNAME = 'test_HeLaZ'; % Job name
 USERNAME      = 'ahoffman';   % username at ppb110 for folder naming
@@ -25,13 +27,13 @@ MU_J    = 0;     % Laguerre hyperdiffusivity -mu_j*(d/dvperp)^4 f
 TMAX    = 150;  % Maximal time unit
 DT      = 2e-2;  % Time step
 SPS0D   = 1;      % Sampling per time unit for profiler
-SPS2D   = 1/2;   % Sampling per time unit for 2D arrays
+SPS2D   = 1/10;   % Sampling per time unit for 2D arrays
 SPS5D   = 1/10;  % Sampling per time unit for 5D arrays
-SPSCP   = 1/10;  % Sampling per time unit for checkpoints
+SPSCP   = 0;     % Sampling per time unit for checkpoints
 RESTART = 0;     % To restart from last checkpoint
 JOB2LOAD= 0;
 %% OPTIONS
-SIMID   = 'test';  % Name of the simulation
+SIMID   = 'test_low_sampling';  % Name of the simulation
 SIMID   = sprintf(SIMID,NU);
 CO      = -3;  % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
 CLOS    = 0;   % Closure model (0: =0 truncation, 1: semi coll, 2: Copy closure J+1 = J, P+2 = P)
@@ -88,11 +90,14 @@ fprintf(fid,[...
 '#!/bin/bash\n',...
 '#SBATCH --job-name=',CLUSTER.JNAME,'\n',...
 '#SBATCH --time=', CLUSTER.TIME,'\n',...
-'#SBATCH -n ', CLUSTER.NODES,'\n',...
+'#SBATCH --nodes=', CLUSTER.NODES,'\n',...
+'#SBATCH --cpus-per-task=', CLUSTER.CPUPT,'\n',...
+'#SBATCH --ntasks-per-node=', CLUSTER.NTPN,'\n',...
 '#SBATCH --mem-per-cpu=', CLUSTER.MEM,'\n',...
 '#SBATCH --error=err.txt\n',...
 '#SBATCH --output=out.txt\n',...
-'module load intel_comp/17.0 impi/17.0 hdf5/1.8.12_intel13.1\n',...
+'module purge\n',...
+'module load PrgEnv-intel/17.0\n',...
 'srun  ./../../../bin/helaz']);
 
 fclose(fid);