Update .gitlab-ci.yml file: CI for HDF5 @ PSNC

* Build chease/chease_hdf5 @ gateway and in a docker image

* Have temporarily removed standard SPC gitlab stuff

.gitlab-ci.yml

-# Includes a common template
-include:
- - project: 'spc/tcv/tbx/git-tools-spc'
-   file: 'gitlab-ci-tbx-template.yml'
-
-variables:
-  TBXFOLDER: matlab/CHEASEgui
-  TBXTARGET: CHEASEgui
-  MATVER: 906
-  MATFIRST: 902
-  TESTCASE: basic
+build-docker-hdf5:
+  stage: build
+  tags:
+    - Docker
+  image: ubuntu:22.04
+  before_script:
+    - apt update
+    - apt install -y gfortran make libhdf5-fortran-102 libhdf5-dev pkg-config libxml2-dev
+  script:
+    - cd src-f90
+    - for target in chease chease_hdf5; do make ${target} CHEASE_MACHINE=linux_hdf5 CHEASE_F90=gfortran Makefile_futils=Makefile.gfortran F90=gfortran INCL_HDF5=$(pkg-config hdf5-serial --cflags) LIBS_HDF5="-Lfutils_src -lfutils -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -lhdf5_fortran -lhdf5 -lmpiuni" -j$(nproc); done
+    - make chease chease-hdf5 -j$(nproc)
+    - cd ..
+    - ldd src-f90/chease_hdf5
 
 # Build
-build:
- extends: .build-template
- script:
- - export
- - echo "Script to build (e.g. mexes)"
- - cd src-f90
- - make chease
- - cd ..
- - ./WK/TESTCASES/NIDEAL10/script_test_chease_from_codes $PWD/src-f90
- - cd src-f90
- - make clean
-
- # Build
 build_h5:
- extends: .build-template
- script:
- - cd src-f90
- #- make -j4 chease_hdf5
- - echo "$(pkg-config hdf5 --cflags) | $(pkg-config hdf5 --libs)"
- - echo "$(pkg-config hdf5-serial --cflags) | $(pkg-config hdf5-serial --libs)"
- - make CHEASE_MACHINE=linux_hdf5 CHEASE_F90=gfortran Makefile_futils=Makefile.gfortran F90=gfortran INCL_HDF5=$(pkg-config hdf5-serial --cflags) LIBS_HDF5="-Lfutils_src -lfutils -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -lhdf5_fortran -lhdf5 -lmpiuni" chease_hdf5 -n -p
- - make CHEASE_MACHINE=linux_hdf5 CHEASE_F90=gfortran Makefile_futils=Makefile.gfortran F90=gfortran INCL_HDF5=$(pkg-config hdf5-serial --cflags) LIBS_HDF5="-Lfutils_src -lfutils -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -lhdf5_fortran -lhdf5 -lmpiuni" chease_hdf5
-
-
-# Build
-validate_py_scripts:
- extends: .build-template
- before_script: null
- script:
- - for pyfile in python/*.py; do echo ${pyfile}; python -m py_compile ${pyfile}; done
- after_script: null
-
-# Tests
-test-matlab-9.2.0:
- extends: .test-template:8.6-to-9.5
- variables:
-  MATLABCMD: matlab920
-
-test-matlab-9.6.0:
- extends: .test-template
- variables:
-  MATLABCMD: matlab960
-
-# Post test report collection
-code-coverage-960:
- extends: .code-coverage-960-template
-
-# Pre-deployment checks
-pre-deployment-checks:
- extends: .pre-deployment-checks-template
-
-# Staging
-pre-deployment-staging:
- extends: .staging-template
-
-test-staging-9.2.0:
- extends: .test-staging-template
- variables:
-  MATLABCMD: matlab920
-
-test-staging-9.6.0:
- extends: .test-staging-template
- variables:
-  MATLABCMD: matlab960
-
-# Deployment
-deployment:
- extends: .deploy-to-lac-template
-
-test-post-deploy-matlab:
- extends: .test-post-deploy-template
-
-# Test deployed version
-daily-tests-deployed:
- extends: .test-deployed-template
+  stage: build
+  tags:
+    - HPC
+  script:
+    - module avail
+    - module show hdf5/1.10.4--intel--pe-xe-2018--binary
+    - module load autoload intel hdf5/1.10.4--intel--pe-xe-2018--binary
+    - cd src-f90
+    - for target in chease chease_hdf5; do make ${target} CHEASE_MACHINE=marconi -j$(nproc); done
+    - cd ..
+    - ldd src-f90/chease_hdf5